feature_generation {cellity} | R Documentation

## Helper Function to create all features

### Description

Helper Function to create all features

### Usage

    feature_generation(counts_nm, read_metrics, GO_terms, extra_genes, organism)

### Arguments

`counts_nm` | Gene expression counts dataframe (genes x cells). Either normalised by library size or TPM values
`read_metrics` | Dataframe with mapping statistics produced by python pipeline
`GO_terms` | DataFrame with gene ontology term IDs, that will be used in feature extraction
`extra_genes` | Additional genes used for feature extraction
`organism` | The target organism to generate the features for

### Value

Returns the entire set of features in a data.frame

[Package cellity version 1.18.0 Index]