get_rankstat_table {celaref} | R Documentation

## get_rankstat_table

### Description

Summarise the comparison of the specified query group against in the comparison in de_table.ref.marked - number of 'top' genes and their median rank in each of the reference groups, with reference group rankings.

### Usage

    get_rankstat_table(de_table.ref.marked, the_test_group)

### Arguments

`de_table.ref.marked` | The output of `get_the_up_genes_for_all_possible_groups` for the contrast of interest.
`the_test_group` | Name of query group to test

### Value

A tibble of query group name (test_group), number of 'top' genes (n), reference dataset group (group) with its ranking (grouprank) and the median (rescaled 0..1) ranking of 'top' genes (median_rank).

### See Also

`get_the_up_genes_for_all_possible_groups` To prepare the de_table.ref.marked input.

### Examples

    # Make input
    # de_table.demo_query <- contrast_each_group_to_the_rest(demo_query_se, "demo_query")
    # de_table.demo_ref   <- contrast_each_group_to_the_rest(demo_ref_se,   "demo_ref")

    de_table.marked.query_vs_ref <- get_the_up_genes_for_all_possible_groups(
        de_table.demo_query,
        de_table.demo_ref)

    get_rankstat_table(de_table.marked.query_vs_ref, "Group3")

[Package celaref version 1.8.0 Index]