find_iteration {ceRNAnetsim} | R Documentation

## Finds the iteration which provides maximum affected node number

### Description

searches the iteration that provides maximum affected node number. The user defines a symbolic iteration with .iter. The function calculates the number of affected nodes for each iteration and then selects the iteration that has maximum affected nodes' number.

### Usage

    find_iteration(df, limit = 0.1, plot = FALSE)

### Arguments

`df` | A tbl graph that includes the miRNA and competing targets triggered and simulated for number of cycles.
`limit` | The minimum amount of change of any node.
`plot` | If TRUE, returns a plot.

### Value

It gives an iteration number to use in simulate() function.

### Examples

    data('midsamp')

    midsamp %>%
      priming_graph(Gene_expression, miRNA_expression) %>%
      update_how('Gene2',2) %>%
      simulate(10) %>%
      find_iteration(limit=0)

[Package ceRNAnetsim version 1.2.1 Index]