denovoGenomeExpr-class {casper} | R Documentation

## Class "denovoGenomeExpr"

### Description

`denovoGeneExpr` stores inferred expression for de novo splicing variants for a single gene. `denovoGenomeExpr` stores the information for several genes (typically, the whole genome).

### Objects from the Class

Objects are returned by `calcDenovo`.

### Slots

islands

  A list of `denovoGeneExpr` objects, with each element containing results for an individual gene.

### Methods

show

  `signature(object = "denovoGenomeExpr")`: Displays general information about the object.

as.list

  Coerces the object to a list

"["

  Selects a subset of genes

"[["

  Selects a single gene

### Author(s)

Camille Stephan-Otto Attolini

### See Also

`procGenome` and `createDenovoGenome` to create `denovoGenomeExpr` objects.

### Examples

    showClass("denovoGeneExpr")
    showClass("denovoGenomeExpr")

[Package casper version 2.24.2 Index]