modelPriorAS-class {casper} | R Documentation

## Class "modelPriorAS"

### Description

`modelPriorAS` stores parameters for the prior distribution on all possible alternative splicing configuration (i.e. prior on model space). This information is used for de novo reconstruction of splicing variants.

### Objects from the Class

Objects are created by function `modelPrior`.

### Slots

nvarPrior

  Prior on the number of variants per gene. A list with components `"nbpar"` containing the parameters of the Negative Binomial distribution, `"obs"` containing the observed counts and `"pred"` the Negative Binomial predicted counts.

nexonPrior

  Prior on the number of exons in an expressed variant. A list with components `"bbpar"` containing Beta-Binomial parameters, `"obs"` containing the observed counts and `"pred"` the Beta-Binomial predicted counts.

### Methods

show

  `signature(object = "modelPriorAS")`: Displays general information about the object.

"["

  Selects prior parameters for genes with the specified number of exons

coef

  Selects a single gene

### Author(s)

David Rossell

### See Also

`procGenome` and `createDenovoGenome` to create `modelPriorAS` objects.

### Examples

    showClass("modelPriorAS")

[Package casper version 2.24.2 Index]