distrsGSE37704 {casper} | R Documentation

## Estimated read start and insert size distributions from MiSeq data in GEO dataset GSE37704.

### Description

We downloaded the fastq files, aligned with TopHat and processed with `wrapKnown` to obtain the estimated distributions for each of the 6 samples. `distrsGSE37704` is a list with the 6 corresponding elements. The estimated distributions for HiSeq data were very similar, hence these distributions can be used as defaults for Illumina MiSeq and HiSeq experiments.

### Usage

    data(distrsGSE37704)

### Format

An `list` with 6 elements of class `readDistrs`. See `help(getDistrs)` and `help(readDistrs-class)` for details.

### Examples

    data(distrsGSE37704)
    distrsGSE37704
    plot(distrsGSE37704[[1]],'readSt')
    lines(distrsGSE37704[[2]], 'readSt', col=2)
    plot(distrsGSE37704[[1]],'fragLength')

[Package casper version 2.24.2 Index]