# Bandwise normalization and batch correction of Hi-C data

## Documentation for package ‘bnbc’ version 1.12.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

bnbc-package | Bandwise normalization and batch correction of Hi-C data
band | Get Band
band<- | Get Band
bnbc | Normalize Contact Matrices with BNBC
boxSmoother | Smoothing Operations
cg2bedgraph2 | Methods for manipulating cooler files
cgApply | Apply-type methods
cgBandApply | Apply-type methods
cgEx | Sample chr22 Data
colData-method | Class '"ContactGroup"'
colData<--method | Class '"ContactGroup"'
ContactGroup | Class '"ContactGroup"'
ContactGroup-class | Class '"ContactGroup"'
contacts | Class '"ContactGroup"'
contacts<- | Class '"ContactGroup"'
dim-method | Class '"ContactGroup"'
distanceIdx | Class '"ContactGroup"'
dropGroupZeros | Group Zero Operations
gaussSmoother | Smoothing Operations
getBandIdx | Get Band Indices
getBandMatrix | Get Band Matrix
getChrCGFromCools | Methods for manipulating cooler files
getGenomeIdx | Methods for manipulating cooler files
getGroupZeros | Group Zero Operations
librarySize | Class '"ContactGroup"'
logCPM | Class '"ContactGroup"'
rowData-method | Class '"ContactGroup"'
rowData<--method | Class '"ContactGroup"'
show-method | Class '"ContactGroup"'
[-method | Class '"ContactGroup"'