biscuitMetadata {biscuiteer} | R Documentation

## Biscuit metadata from VCF header

### Description

Returns metadata from a Biscuit run using either a supplied VCF file or the vcfHeader metadata element from the bsseq object

### Usage

    biscuitMetadata(bsseq = NULL, VCF = NULL)

    getBiscuitMetadata(bsseq = NULL, VCF = NULL)

### Arguments

`bsseq` | A bsseq object with a vcfHeader element (DEFAULT: NULL)
`VCF` | A tabix'ed VCF file (can just be the header information) from which the bsseq vcfHeader element is derived (DEFAULT: NULL)

### Value

      Information regarding the Biscuit run

### Functions

- `getBiscuitMetadata`: Alias for biscuitMetadata

### Examples

      orig_bed <- system.file("extdata", "MCF7_Cunha_chr11p15.bed.gz",
                              package="biscuiteer")
      orig_vcf <- system.file("extdata", "MCF7_Cunha_header_only.vcf.gz",
                              package="biscuiteer")
      bisc <- readBiscuit(BEDfile = orig_bed, VCFfile = orig_vcf,
                          merged = FALSE)

      meta <- biscuitMetadata(bisc)

[Package biscuiteer version 1.4.0 Index]