segToGr {biscuiteer} | R Documentation

## Import a segmentation file into GRanges object

### Description

Reverse of grToSeg

### Usage

    segToGr(seg, genome = "hg19", name = "ID", score = "seg.mean")

### Arguments

`seg` | The .seg filename
`genome` | Genome against which segments were annotated (DEFAULT: "hg19")
`name` | .seg file column to use as $name metadata (DEFAULT: "ID")
`score` | .seg file column to use as $score metadata (DEFAULT: "seg.mean")

### Value

       A GRanges object

### See Also

grToSeg

### Examples

      clock <- getClock(model="horvathshrunk", genome="hg38")
      gr <- clock$gr

      df <- grToSeg(gr = gr, file = "test_grToSeg.seg")
      segs <- segToGr("test_grToSeg.seg", genome="hg38")

      if (file.exists("test_grToSeg.seg")) file.remove("test_grToSeg.seg")

[Package biscuiteer version 1.4.0 Index]