RRBSeq {biscuiteer} | R Documentation

## (e)RRBS settings for dmrseq

### Description

(e)RRBS settings for dmrseq

### Usage

    RRBSeq(bsseq, testCovariate, cutoff = 0.2, bpSpan = 750, ...)

### Arguments

`bsseq` | A bsseq object
`testCovariate` | The pData column to test on
`cutoff` | The minimum CpG-wise difference to use (DEFAULT: 0.2)
`bpSpan` | Span of smoother AND max gap in DMR CpGs (DEFAULT: 750)
`...` | Other arguments to pass along to dmrseq

### Value

              A GRanges object (same as from dmrseq)

### Examples

      data(BS.chr21, package="dmrseq")
      dat <- BS.chr21

      rrbs <- RRBSeq(dat[1:500, ], "Rep", cutoff = 0.05, BPPARAM=BiocParallel::SerialParam())

[Package biscuiteer version 1.4.0 Index]