soybean_cn_metrics {bigPint} | R Documentation

## Normalized soybean cotyledon metrics

### Description

This data contains metrics for normalized RNA-sequencing read counts from soybean cotyledon across three time stages of development. Early stage cotyledons were collected four days after planting and were green but closed. Middle stage cotyledons were collected while green and open, soon after the plant generated its first set of unifoliate leaves. Late stage cotyledons were collected immediately after the initiation of yellowing and shrinking. The metrics include the log fold change, log counts per million, likelihood ratio, p-values, and FDR values for all genes and all pairwise combinations of treatment groups.

### Format

a `RData` instance, 1 list per treatment group combination and 1 row per gene

A nested list of length 3. Each list contains the metrics for the 73,320 genes for one treatment group combination.

### Details

Normalized soybean cotyledon metrics

- ID gene name

- logFC log fold change

- logCPM log counts per million

- LR likelihood ratio

- PValue p-value

- FDR FDR value

### See Also

`soybean_cn` for information about the treatment groups

[Package bigPint version 1.6.0 Index]