AttractorModuleSet-class {attract} | R Documentation

## Class AttractorModuleSet

### Description

This is a class representation for storing the output of the `findAttractors` function.

### Objects from the Class

Objects are output by the function `findAttractors`. Objects can also be created by using `new("AttractorModuleSet", ...)`.

### Slots

`eSet`:

  ExpressionSet which primarily stores the expression data and the phenotype/sample data sets.

`cellTypeTag`:

  character string of the tag which stores the group membership information for the samples. Must be a column name of the data frame pData(eset).

`incidenceMatrix`:

  incidence matrix used as input to GSEAlm.

`rankedPathways`:

  Data frame of significantly enriched pathways, ranked first by significance and then by size.

### Methods

No methods have yet been defined with class "AttractorModuleSet" in the signature.

### Note

This class is better describe in the vignette.

### Author(s)

Jessica Mar jess@jimmy.harvard.edu

### Examples

    ## Not run:
    new.attractmodule <- new("AttractorModuleSet", eSet=new("ExpressionSet"), cellTypeTag=character(1), incidenceMatrix=matrix(0), rankedPathways=data.frame())

    ## End(Not run)

[Package attract version 1.42.0 Index]