plotMotifMatch {atSNP} | R Documentation

## Plot sequence logos of the position weight matrix of the motif and sequences of its corresponding best matching augmented subsequence on the reference and SNP allele.

### Description

Plot the best matching augmented subsequences on the reference and SNP alleles. Plot sequence logos of the position weight matrix of the motif to the corresponding positions of the best matching subsequences on the references and SNP alleles.

### Usage

    plotMotifMatch(motif.match, motif.lib, cex.main = 2, ...)

### Arguments

`motif.match` | a single row ofdtMotifMatch output in data.frame format
`motif.lib` | A list of position weight matrices
`cex.main` | The size of the main title.
`...` | Other parameters passed to plotMotifLogo.

### Value

Sequence logo stacks: Reference subsequences, sequence logo of reference allele matching potision weight matrix, SNP subsequences, sequence logo of SNP allele matching potision weight matrix

### Author(s)

Sunyoung Shinsunyoung.shin@utdallas.edu

### Examples

    data(example)
    plotMotifMatch(motif_match, motif.lib = motif_library)

[Package atSNP version 1.6.1 Index]