GetIUPACSequence {atSNP} | R Documentation

## Get the IUPAC sequence of a motif.

### Description

Convert the posotion weight matrix of a motif to the IUPAC sequence.

### Usage

    GetIUPACSequence(pwm, prob = 0.25)

### Arguments

`pwm` | The position weight matrix, with the columns representing A, C, G, T.
`prob` | The probability threshold. Default: 0.25.

### Value

A character string.

### Author(s)

Sunyoung Shin sunyoung.shin@utdallas.edu, Chandler Zuo chandler.c.zuo@gmail.com

### Examples

    data(example)
    GetIUPACSequence(motif_library[[1]], prob = 0.2)

[Package atSNP version 1.6.1 Index]