artmsFilterEvidenceContaminants {artMS} | R Documentation

## Remove contaminants and empty proteins from the MaxQuant evidence file

### Description

Remove contaminants and erronously identified 'reverse' sequences by MaxQuant, in addition to empty protein ids

### Usage

    artmsFilterEvidenceContaminants(x, verbose = TRUE)

### Arguments

`x` | (data.frame) of the Evidence file
`verbose` | (logical) `TRUE` (default) shows function messages

### Value

(data.frame) without REV__ and CON__ Protein ids

### Examples

    ef <- artmsFilterEvidenceContaminants(x = artms_data_ph_evidence)

[Package artMS version 1.8.3 Index]