artmsAnnotationUniprot {artMS} | R Documentation

## Annotate table with Gene Symbol and Name based on Uniprot ID(s)

### Description

Annotate gene name and symbol based on uniprot ids. It will take the column from your data.frame specified by the `columnid` argument, search for the gene symbol, name, and entrez based on the species (`species` argument) and merge the information back to the input data.frame

### Usage

    artmsAnnotationUniprot(x, columnid, species, verbose = TRUE)

### Arguments

`x` | (data.frame) to be annotated (or file path and name)
`columnid` | (char) The column with the uniprotkb ids
`species` | (char) The species name. Check `?artmsMapUniprot2Entrez` to find out more about supported species.
`verbose` | (logical) `TRUE` (default) shows function messages

### Value

(data.frame) with two new columns: `Gene` and `Protein.name`

### Examples

    # This example adds annotations to the evidence file available in
    # artMS, based on the column 'Proteins'.

    evidence_anno <- artmsAnnotationUniprot(x = artms_data_ph_evidence,
                                             columnid = 'Proteins',
                                             species = 'human')

[Package artMS version 1.8.3 Index]