plotAlevinQuant {alevinQC} | R Documentation

## Panel of plots with quantification summary statistics

### Description

Panel of plots with quantification summary statistics

### Usage

    plotAlevinQuant(
      cbTable,
      colName = "inFinalWhiteList",
      cbName = "final whitelist"
    )

### Arguments

`cbTable` | `data.frame` (such as the `cbTable` returned by `readAlevinQC`) with collapsed barcode frequencies, the total UMI count and the number of detected genes for each cell.
`colName` | Character scalar giving the name of a logical column of `cbTable` to use for coloring the points.
`cbName` | Character scalar giving the name of the set of barcodes defined by `colName`, used for labelling the plot legend.

### Value

A ggplot object

### Author(s)

Charlotte Soneson

### Examples

    alevin <- readAlevinQC(system.file("extdata/alevin_example_v0.14",
                                       package = "alevinQC"))
    plotAlevinQuant(alevin$cbTable, colName = "inFinalWhiteList",
                    cbName = "final whitelist")

[Package alevinQC version 1.6.1 Index]