plotAlevinHistogram {alevinQC} | R Documentation

## Histogram of selected summary statistic

### Description

Histogram of selected summary statistic

### Usage

    plotAlevinHistogram(
      cbTable,
      plotVar = "dedupRate",
      axisLabel = plotVar,
      colName = "inFinalWhiteList",
      cbName = "final whitelist"
    )

### Arguments

`cbTable` | `data.frame` (such as the `cbTable` returned by `readAlevinQC`) containing the desired summary statistic in a column.
`plotVar` | Character scalar giving the name of a numeric column of `cbTable` to plot.
`axisLabel` | Character scalar giving the label of the selected statistic (will be displayed as the axis label in the plot).
`colName` | Character scalar giving the name of a logical column of `cbTable` to use for filling the bars in the histogram.
`cbName` | Character scalar giving the name of the set of barcodes defined by `colName`, used for labelling the plot legend.

### Value

A ggplot object

### Author(s)

Charlotte Soneson

### Examples

    alevin <- readAlevinQC(system.file("extdata/alevin_example_v0.14",
                                       package = "alevinQC"))
    plotAlevinHistogram(alevin$cbTable, plotVar = "dedupRate",
                        axisLabel = "Deduplication rate",
                        colName = "inFinalWhiteList",
                        cbName = "final whitelist")

[Package alevinQC version 1.6.1 Index]