alevinQCShiny {alevinQC} | R Documentation

## Generate alevin summary shiny app

### Description

Generate a shiny app summarizing the main aspects of an alevin quantification run. The app generation assumes that alevin has been run with the –dumpFeatures flag to generate the necessary output files.

### Usage

    alevinQCShiny(baseDir, sampleId, customCBList = list())

### Arguments

`baseDir` | Path to the output directory from the alevin run (should be the directory containing the `alevin` directory).
`sampleId` | Sample ID, will be used set the title for the app.
`customCBList` | Named list with custom set(s) of barcodes to provide summary statistics/plots for, in addition to the whitelists generated by alevin.

### Value

A shiny app.

### Author(s)

Charlotte Soneson

### Examples

    app <- alevinQCShiny(baseDir = system.file("extdata/alevin_example_v0.14",
                                               package = "alevinQC"),
                         sampleId = "example")
    if (interactive()) {
        shiny::runApp(app)
    }

[Package alevinQC version 1.6.1 Index]