make_comparison_matrix {YAPSA} | R Documentation

## Compute a similarity matrix for different strata

### Description

Compute and plot a similarity matrix for different strata from different stratification axes together. First, `compare_sets` is called on `in_strata_df` with itself, yielding a distance matrix (a numerical data frame) `dist_df` of the strata. The corresponding similarity matrix `1-dif_df` is then passed to `corrplot`.

### Usage

    make_comparison_matrix(
      in_strata_df,
      output_path = NULL,
      in_nrect = 5,
      in_attribute = "",
      in_palette = NULL
    )

### Arguments

`in_strata_df` | Numerical data frame of all strata to be compared.
`output_path` | Path to directory where the results, especially the figure produced by `corrplot` is going to be stored.
`in_nrect` | Number of clusters in the clustering procedure provided by `corrplot`
`in_attribute` | Additional string for the file name where the figure produced by `corrplot` is going to be stored.
`in_palette` | Colour palette for the matrix

### Value

The comparison matrix of cosine similarities.

### See Also

`compare_SMCs`

### Examples

    data(sigs)
    make_comparison_matrix(
     AlexCosmicValid_sig_df,in_nrect=9,
     in_palette=colorRampPalette(c("blue","green","red"))(n=100))

[Package YAPSA version 1.16.0 Index]