GOcount {ViSEAGO} | R Documentation

## Barplot for the count of GO terms.

### Description

This method displays in barplot the count of GO terms splitted in two categories (significant or not) for each result of GO enrichment tests.

### Usage

    GOcount(object, file = NULL)

    ## S4 method for signature 'ANY'
    GOcount(object, file = NULL)

### Arguments

`object` | an `enrich_GO_terms-class` object from `merge_enrich_terms` method.
`file` | the name of the output file (default to NULL for interactive screen display).

### Details

This method displays an interactive barplot, using plotly package, from a `merge_enrich_terms` output object.
A static image (in png) could be printed by setting `file` argument.

### Value

a barplot.

### References

Carson Sievert, Chris Parmer, Toby Hocking, Scott Chamberlain, Karthik Ram, Marianne Corvellec and Pedro Despouy (2017). plotly: Create InteractiveWeb Graphics via 'plotly.js'. R package version 4.6.0. https://CRAN.R-project.org/package=plotly.

### See Also

Other GO_terms: `GOterms_heatmap()`, `annotate()`, `create_topGOdata()`, `gene2GO-class`, `merge_enrich_terms()`, `runfgsea()`

Other visualization: `GOclusters_heatmap()`, `GOterms_heatmap()`, `Upset()`, `available_organisms()`, `overLapper()`, `show_heatmap()`, `show_table()`

### Examples

    # load object
    utils::data(
     myGOs,
     package="ViSEAGO"
    )

    # barplot for the count of GO terms
    ViSEAGO::GOcount( myGOs)

[Package ViSEAGO version 1.4.0 Index]