f89938114c7d02dec56d1ad561031659 *DESCRIPTION
8bd6afcf8e152dc9999d9066707cc81a *INDEX
f30c9da0b4e2fca792d9ebd19e5b6a41 *Meta/Rd.rds
4d7eff581dcc7099d1a67a251a31985f *Meta/data.rds
1d15b8cd6573641f81c4126b0438e9c2 *Meta/features.rds
0d0f9f37d059a36c97b90203ff325f12 *Meta/hsearch.rds
7d0ce4604d36331f6f02ad8fa9bd67a6 *Meta/links.rds
f0810b37b3d2ca8ece10b156fdeff8a4 *Meta/nsInfo.rds
d60fa106ff06d9734ade2003eac6a31f *Meta/package.rds
d76d324f8eadf98e95e1214c21391fdb *Meta/vignette.rds
f2a560657232b2afbdce094b763648da *NAMESPACE
302eb74005d4628313dd72f235ada0c6 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/VariantTools
8171cd300899f16131691c1c13dc7a28 *R/VariantTools.rdb
edf012fbd08cea69f1aeb9888d7db8ec *R/VariantTools.rdx
147b05616262b8b0605ad82917fe8c23 *data/vignette.rda
8d5ddf1aee747bfe9f75ad0ffc3f13e3 *doc/VariantTools.R
b7f9d4a21e2fe40fe4373ba070ec12c4 *doc/VariantTools.Rnw
e187295f7875a65be33f49a2e5a36b92 *doc/VariantTools.pdf
e502007f6e906fa8467344cec2f4e1b6 *doc/fig/VariantCallingProcess.pdf
e6a9a9d24613ddbf590543bc5ebeac0d *doc/fig/bar-caller-freq-summary-dbSNP-count-all.pdf
0ea34819326314eae4c6b9d5f4ee9dbe *doc/fig/bar-fdr-cov-bin-merged-all.pdf
1c91bbadcef2b6cba06c5d9b328ba192 *doc/fig/bar-fnr-cov-bin-merged-all.pdf
380b2a619aefe23bd017320b0f05540f *doc/fig/boxplot-altFraction.pdf
34a468a845bb92d33e20533d70da349b *doc/fig/boxplot-expected-obs-freq-source-merged-vt.pdf
dc08e35af067169253e263d844fbc13f *doc/fig/boxplot-obs-freq-sample-ceu-all.pdf
a6d1a91d902b823ea49e3533087adc3a *doc/fig/density-altFraction.pdf
9081576fb3392c333fa126ad4557c53a *doc/fig/dot-percent-recovered-caller-merged-20-all.pdf
31b854f38096fba1546ecf0124be1101 *doc/fig/errors.pdf
ff7f4e378ea15116c447180c721ed35c *doc/fig/hist-fdr-rep-count-all.pdf
cafe8bda6b95fb9dd48a1f3dcd14fca3 *doc/fig/igv_high_cov_neg.png
72c5d2679455c4913dfc6c684c2839e2 *doc/fig/mix.pdf
5192ba8e79d29bf7c9f7f2008dd7aa98 *doc/fig/post-filters.pdf
c81e6de4687156b4883bdefed5c79edb *doc/fig/variant-calling-filters.pdf
8360dff4ce73e85ebe879d662a8da062 *doc/fig/workflow.pdf
a6d9c0aa068f83ee474249201946c09f *doc/index.html
04f3442396ed48d6be465606e784d7ca *doc/tutorial.org
e18d1dc09c30c968212c5bef7d5dd6da *doc/tutorial.pdf
e372e3b655282fec0a7ca5f149509595 *help/AnIndex
393b740f639f0418c416c21aead5e97b *help/VariantTools.rdb
6ab6f6714a1043f43812f3b60a9f2927 *help/VariantTools.rdx
a54a242b662d97802dac63820c739917 *help/aliases.rds
98aa49be59daecb2a3bbabacf9118dab *help/paths.rds
6fc41924d0a1742b88316620e3eeb6e2 *html/00Index.html
05d177ac3572b157dbb0226c291ad243 *html/FilterConstructors.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
b37ee1a7b745822c093107c78c9e2a45 *html/annnotateWithControlDepth.html
4ea47b0dba412d71b7454a5061c9c32f *html/callGenotypes.html
f8749ce447ac854a4a75a9963da9a69f *html/callSampleSpecificVariants.html
699a2f8f65b12c496b7bc56d2713571c *html/callVariants.html
0a588f4c982faea7e67ee4db0600213b *html/callWildtype.html
6ade2b2a4395a11b0b5e3c8a16c45ebb *html/concordance.html
c4e522356abfc4b1bb8fe4e9fefe7634 *html/extractCoverageForPositions.html
d7c7a95ddf6bb08690ecce15f50a96ce *html/matchVariants.html
4f7d658fe8bc2f9c9f616c6d7a46b18c *html/pileupVariants.html
e73f4f407a2151b67b4836a8e0fafd54 *html/postFilterVariants.html
b4355b4d64fa14097b78035b95a07412 *html/qaVariants.html
8d924e9005a4f566af5d5aa5e0536f22 *html/tallyVariants.html
6bdf13cc12656fb1206edae72a6dc371 *html/variantGR2Vcf.html
376d7311f074be5306c27d8d2cb4df7c *html/vignette.html
2c4749f07b3615e481b4df89ca88d34d *unitTests/test_calculateConcordanceMatrix.R
2ff6eb94487808d81e15a164c69023f1 *unitTests/test_idVerify.R
cfc6d0f068fbd1c0cf8017e5aae89743 *unitTests/test_variantConcordance.R
a43c2278392bc452656836bbd0ceafae *vcf/header.csv
