d78e5d4bfb7b395cc500293e255d3365 *CITATION
8b9bf41fd335ee01f295c6ce63212f82 *DESCRIPTION
21dd2c928d17e4f743215ab035394b8d *INDEX
04604989e627c1f56b2146acb6faba95 *Meta/Rd.rds
1d15b8cd6573641f81c4126b0438e9c2 *Meta/features.rds
60389356900bf1edaa129e7329d53adf *Meta/hsearch.rds
1776cbabaa985a98eaea9892312c7a7c *Meta/links.rds
22e606fddf0d518e7f8e165589d1229f *Meta/nsInfo.rds
d315ddf664be23cc32a72fed0d4b02eb *Meta/package.rds
64a7f5f3312fd8a21ff0e65f56ffcc5c *Meta/vignette.rds
274f24c6eef7e7b55a4337a30519bcaf *NAMESPACE
a4fff23b4696800df6623db4395f5d14 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/VariantAnnotation
4c7e36562800475d12bfdaaa5bc76051 *R/VariantAnnotation.rdb
0a7a4e76cd35f0e8b3a33b00feb25f2d *R/VariantAnnotation.rdx
516b3343dc68d663fac6a41d21e7c915 *doc/VariantAnnotation.R
dfa5fd2cbcb069a9b6f5730136ba998d *doc/VariantAnnotation.Rnw
db07c5c7eaf62a4871b0ba0f9a5f092d *doc/VariantAnnotation.pdf
f900f6b0aef3b2cd12d04d41c3b1b206 *doc/filterVcf.R
d45aa9e2c736ae48706a388fa61770d4 *doc/filterVcf.Rnw
71c1407a697b27a346f6fc1dfe4da05b *doc/filterVcf.pdf
879da333b138ca5d31f64b6639487e51 *doc/index.html
46e78a67f51161387c4c13aeefe80367 *extdata/chr22.vcf.gz
540ee7e114a2c3c9f9730610940ec47f *extdata/chr22.vcf.gz.tbi
a4ca21413e322997ed17c5429e65b9ca *extdata/chr7-sub.vcf.gz
dc5c0ecc784ff39509a164f3020b72f8 *extdata/chr7-sub.vcf.gz.tbi
b325a60a320b6aebb41d41d1dafb9c6d *extdata/ex2.vcf
277341ce20f406ab09a0c23c6bd0d86f *extdata/gl_chr1.vcf
f2a805083bd71e155f977ffb49df2cd5 *extdata/h1187-10k.vcf.gz
fab30e49f0d054d462f8e1737844b204 *extdata/h1187-10k.vcf.gz.tbi
dac0f427ab59994c11859f2b09bab618 *extdata/hapmap_exome_chr22.vcf.gz
ff0775ab73d21645fa114d487e5ebcfd *extdata/hapmap_exome_chr22.vcf.gz.tbi
48852d332eb21dd639b4c6be53762357 *extdata/structural.vcf
305019f4f621ba9ecd1126c527371e18 *help/AnIndex
147c1a040d1c82e07e0101db3da57016 *help/VariantAnnotation.rdb
8b856b44d9b69ad8ec5dd8571b4d0518 *help/VariantAnnotation.rdx
76e7969d6e9e2b8b2f1b243ed05753ea *help/aliases.rds
676c141d4bd7f4f55432c5ba9a84229f *help/paths.rds
9c3ba3996b7b4a770cf6dfb37d272b91 *html/00Index.html
5bfd1a4b481ea02d5a4495ad27b01159 *html/GLtoGP.html
af9e1e275a23b8c2441f8c4429944493 *html/PROVEANDb-class.html
8dcc56ee64508f92992b5fef235d23d3 *html/PolyPhenDb-class.html
31067694ab6294228213adf18dabcac5 *html/PolyPhenDbColumns.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
00248709d55d67072a519a6b5909c357 *html/SIFTDb-class.html
d8d12afb7cd4841c4d0f676cf7dbd898 *html/SIFTDbColumns.html
5b3862e2a4ecfd37aa2f182dc4786a37 *html/ScanVcfParam-class.html
202067e2112f2633642a709bc118c1b9 *html/VCF-class.html
35d5068651104d95911c4a74e11a1e75 *html/VCFHeader-class.html
383e093ccbec17581a9d825922ae09a0 *html/VRanges-class.html
308247c46bd38436b79581ce2e0918ad *html/VRangesList-class.html
13eac431d73e9e136441a62caaf02440 *html/VariantType-class.html
0f6450359753fcd11a5c597ea9cb8633 *html/VcfFile-class.html
a7be3b53c8c6417e598f1a5f37dc2e8b *html/defunct.html
69f891ed0ae479823403a1e6d6d0088b *html/filterVcf-methods.html
40163d0d66b3df82b812b12e9a244817 *html/genotypeToSnpMatrix-methods.html
be9892e46b43fa85de8c879317a3f5b3 *html/getTranscriptSeqs-methods.html
a8fb37833c82f6c4bf55d6d4f92a5501 *html/indexVcf-method.html
48332c23f263b8083abafcfb2825e959 *html/isSNV-methods.html
45975385af1a8057769d54879f541035 *html/locateVariants-methods.html
708da62709008f665c182b8381cd3aaf *html/predictCoding-methods.html
0e84ba23ef0e167ce3bf7772f84941e4 *html/probabilityToSnpMatrix.html
2e1d38ec553d798d8ae48bf9ced107c1 *html/readVcf-methods.html
bd4040ae56f02eda68bfc820752c3202 *html/scanVcf-methods.html
ab6d994dec1c9995bbf644cd9b199af7 *html/seqinfo-method.html
ad20c13704759c94e42a451d74f48721 *html/snpSummary.html
f7cf1aa357d5bc90f7e78a8770c8cc36 *html/summarizeVariants-methods.html
4330cbff4d5685be42adbae6abef672a *html/writeVcf-methods.html
8da074a87bbe744202b0dc13e10326a5 *libs/i386/VariantAnnotation.dll
ba00301976dbeae785f89f0e7c753850 *libs/x64/VariantAnnotation.dll
17f1c6f05e7a9ff7756b6efabce3f745 *scripts/test_Rplinkseq.R
b7a9592a5de31dd84a3f7e8d1e0332de *unitTests/cases/FORMAT_header_no_SAMPLEs.vcf
9ce56b3cbbb6829d3e3236a106046da0 *unitTests/cases/VarScan_header.vcf
0c5f14796bf4eb3683ceff8e559f43d7 *unitTests/cases/banded_gvcf.vcf
0fbb3e914d7a97208d8d1eb8fcb93026 *unitTests/cases/buffer_realloc.vcf
992d76f76b4634d6ea263b873f92cbac *unitTests/cases/ex1-seq1-90.vcf
4619ce5ed3abf69b38c13f8a72ca9755 *unitTests/cases/expand.vcf
7be3dfdcd77d28fe84fdeb30ea096d58 *unitTests/cases/fewer-FORMAT-than-GENO.vcf
dfc226165c7c64d2e24a1fe952600cdd *unitTests/cases/meta_header.vcf
3d07a0b85a80b389b0ee5ba3dba11b13 *unitTests/cases/missing-FORMAT-metadata-elt.vcf
ba4c3b28d5f63740fda11e70a19eccd7 *unitTests/cases/mixedStructural.vcf
0230db3391a4a664fd5e2236fd0e5a92 *unitTests/cases/multiple_INFO_fields.vcf
752d9d47c17d8f66791ce8804d88dbf6 *unitTests/cases/negative_FORMAT_Number.vcf
39d8ae8aa155e4bac07e9215017143e7 *unitTests/cases/no_FORMAT_column.vcf
4fc8b2f12f8b054e888ce092bb5b5443 *unitTests/cases/no_GENO_row.vcf
a99d3b281abdd928c30fd147de3848a0 *unitTests/cases/no_INFO_header.vcf
0c5bd63cfafbad13a8591b4963e0d411 *unitTests/cases/unspecified_INFO_FORMAT_fields.vcf
0b5b4448b336d5a5b56d18cf818f9712 *unitTests/test_SIFTandPolyPhen.R
d08510e74b080b9d0830a1941740ea90 *unitTests/test_ScanVcfParam-class.R
dedcdc316629cb8661cc893f6d18da0f *unitTests/test_VCF-class.R
f794098e916c49a86454bb58fe55fdb1 *unitTests/test_VRanges-class.R
98f30f7a93c9bb3ea1605f693d02b569 *unitTests/test_expand-methods.R
ad687c9f6717a20333e98db69fe89286 *unitTests/test_filterVcf.R
7c00151d0528b740a94ddb9a8504898a *unitTests/test_genotypeToSnpMatrix.R
2c2205ed5a0c6d352887365ce90f025a *unitTests/test_isSNV.R
5c303ea47fa41a2fcc89f6c834c5d83e *unitTests/test_locateVariants-methods.R
b92e0e7b951b75b850b37d0204efa1f5 *unitTests/test_predictCoding-methods.R
5044be812d16c430cbc3a2451c10eba4 *unitTests/test_readVcf-methods.R
16a5eae70d0e330c6660e94f57fdf32f *unitTests/test_scanVcf.R
e45debe5cc9e5a797032c5ece476a74c *unitTests/test_snpSummary.R
d98bfd1bf44ccafabe740b9ae42d1208 *unitTests/test_summarizeVariants-methods.R
118c0fdfd316bc754c56babc45b3bbdf *unitTests/test_vcfFields.R
63c02835c8ecc7f75d976dff37e41444 *unitTests/test_writeVcf-methods.R
