plotDifferential {UMI4Cats} | R Documentation

## Plot differential contacts

### Description

Plot differential contacts

### Usage

    plotDifferential(umi4c, grouping = NULL, colors = NULL, xlim = NULL)

### Arguments

`umi4c` | UMI4C object as generated by `makeUMI4C`.
`grouping` | Grouping used for the different samples. If none available or want to add new groupings, run `addGrouping`.
`colors` | Named vector of colors to use for plotting for each group.
`xlim` | Limits for the plot x axis (genomic coordinates).

### Value

Produces a plot of the fold changes at the differential regions analyzed ghat are contained in the UMI4C object.

### Examples

    data("ex_ciita_umi4c")
    ex_ciita_umi4c <- addGrouping(ex_ciita_umi4c, grouping="condition")

    enh <- GRanges(c("chr16:10925006-10928900", "chr16:11102721-11103700"))
    umi_dif <- fisherUMI4C(ex_ciita_umi4c, query_regions = enh,
                           filter_low = 20, resize = 5e3)
    plotDifferential(umi_dif)

[Package UMI4Cats version 1.0.1 Index]