getNormalizationMatrix {UMI4Cats} | R Documentation

## Get normalization matrix

### Description

Will return a normalization matrix.

### Usage

    getNormalizationMatrix(
      umi4c,
      norm_bins = 10^(3:6),
      post_smooth_win = 50,
      r_expand = 1.2
    )

### Arguments

`umi4c` | UMI4C object as generated by `makeUMI4C`.
`norm_bins` | Numeric vector with the genomic bins to use for normalization. Default: 1K, 10K, 100K, 1Mb.
`post_smooth_win` | Numeric indicating the smoothing window to use. Default: 50.
`r_expand` | Numeric indicanting the expansion value for normalization. Default: 1.2.

### Value

Creates a matrix of normalization factors using as a reference the profile specified in the UMI4C object.

[Package UMI4Cats version 1.0.1 Index]