plotGenes {UMI4Cats} | R Documentation

## Plot genes

### Description

Plot genes in a window of interest.

### Usage

    plotGenes(
      window,
      TxDb = TxDb.Hsapiens.UCSC.hg19.knownGene::TxDb.Hsapiens.UCSC.hg19.knownGene,
      longest = TRUE,
      xlim = NULL,
      font_size = 14
    )

### Arguments

`window` | GRanges object with coordinates to use for selecting the genes to plot.
`TxDb` | TxDb object to use for drawing the genomic annotation.
`longest` | Logical indicating whether to plot only the longest transcripts for each gene in the gene annotation plot.
`xlim` | Limits for the plot x axis (genomic coordinates).
`font_size` | Base font size to use for the UMI4C plot. Default: 14.

### Value

Produces a plot with the genes found in the provided `window`.

### Examples

    window <- GRanges("chr16:11348649-11349648")
    plotGenes(
        window = window,
        TxDb = TxDb.Hsapiens.UCSC.hg19.knownGene::TxDb.Hsapiens.UCSC.hg19.knownGene
    )

[Package UMI4Cats version 1.0.1 Index]