UMI4C2dds {UMI4Cats} | R Documentation

## UMI4Cats object to DDS object.

### Description

Transforms an UMI4C object to a DDS object

### Usage

    UMI4C2dds(umi4c, design = ~condition, query_regions = NULL, ...)

### Arguments

`umi4c` | UMI4C object as generated by `makeUMI4C` or the `UMI4C` constructor.
`design` | A `formula` or `matrix`. The formula expresses how the counts for each fragment end depend on the variables in `colData`. See `DESeqDataSet`.
`query_regions` | `GRanges` object or `data.frame` containing the coordinates of the genomic regions you want to use to perform the analysis in specific genomic intervals. Default: NULL.
`...` | Other arguments to be passed to `DESeq` function.

### Value

DDS object.

[Package UMI4Cats version 1.0.1 Index]