tppQCPlotsCorrelateExperiments {TPP} | R Documentation

## Visually compare fold changes of different TPP experiments.

### Description

Plot pairwise relationships between the proteins in different TPP experiments.

### Usage

    tppQCPlotsCorrelateExperiments(
      tppData,
      annotStr = "",
      path = NULL,
      ggplotTheme = tppDefaultTheme()
    )

### Arguments

`tppData` | List of expressionSets with data to be plotted.
`annotStr` | String with additional information to be added to the plot.
`path` | Location where to store resulting plot.
`ggplotTheme` | ggplot theme for the created plots.

### Value

List of plots for each experiment.

### See Also

`tppDefaultTheme`

### Examples

    data(hdacTR_smallExample)
    tpptrData <- tpptrImport(configTable=hdacTR_config, data=hdacTR_data)
    # Quality control (QC) plots BEFORE normalization:
    tppQCPlotsCorrelateExperiments(tppData=tpptrData,
    annotStr="Non-normalized Fold Changes")
    # Quality control (QC) plots AFTER normalization:
    tpptrNorm <- tpptrNormalize(data=tpptrData, normReqs=tpptrDefaultNormReqs())
    tpptrDataNormalized <- tpptrNorm$normData
    tppQCPlotsCorrelateExperiments(tppData=tpptrDataNormalized,
    annotStr="Normalized Fold Changes")

[Package TPP version 3.18.0 Index]