# Transcription Factor High Accumulation Zones

## Documentation for package ‘TFHAZ’ version 1.12.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

accumulation | Creates a vector with accumulation counts of transcription factors for each chromosome base.
base_dense_w_10 | Contains an output of the dense_zones function.
dense_zones | Finds transcription factor dense DNA zones for different accumulation threshold values.
high_accumulation_zones | Finds transcription factor high accumulation DNA zones.
Ishikawa | Contains genomic regions of transcription factors at the ranges side and the name of the transcription factors at the metadata side.
n_zones_PCA | Principal Component Analysis of the number of dense zones obtained with the three methods of accumulation (TF, region, base).
plot_accumulation | Plots the accumulation vector obtained with the accumulation function.
plot_n_zones | Plots the number of dense zones for each threshold value.
reg_dense_w_10 | Contains an output of the dense_zones function.
TF_acc_w_0 | Contains an output of the accumulation function.
TF_dense_w_0 | Contains an output of the dense_zones function.
TF_dense_w_10 | Contains an output of the dense_zones function.
TF_dense_w_100 | Contains an output of the dense_zones function.
TF_dense_w_1000 | Contains an output of the dense_zones function.
TF_dense_w_10000 | Contains an output of the dense_zones function.
w_analysis | Shows the number of dense zones obtained with different values of base neighborhood window width.