Ishikawa {TFHAZ} | R Documentation

## Contains genomic regions of transcription factors at the ranges side and the name of the transcription factors at the metadata side.

### Description

Ishikawa is a Large GRanges object with 283,009 ranges and 1 metadata column. Each range represents the coordinates of a TF binding region while metadata column indicates the name of the TF.

### Usage

    data("Ishikawa")

### Format

An object of class "GRanges"

### Details

The dataset is obtained from computation of ENCODE ChIP-Seq data of the localization of transcription factor binding sites of the Ishikawa cell line. The data have been processed and extracted with GMQL (GenoMetric Query Language http://www.bioinformatics.deib.polimi.it/ GMQL/).

### Value

None, the function is invoked for its side effect.

### Examples

    # loading dataset
    data("Ishikawa")
    head(Ishikawa)

[Package TFHAZ version 1.12.0 Index]