XMatrixList {TFBSTools} | R Documentation

## Class `"XMatrixList"`

### Description

The XMatrixList virtual class is a container for storing a collection of XMatrix objects. No object can be constructed directly from this virtual and it has three subclasses: PFMatrixList, PWMatrixList and ICMatrixList. Basically it is a SimpleList and is designed for manipulating the set of XMatrix objects as a whole.

### Usage

    ## Constructors:
    PFMatrixList(..., use.names=TRUE)
    PWMatrixList(..., use.names=TRUE)
    ICMatrixList(..., use.names=TRUE)

    ## Accessor-like methods:
    ## S4 method for signature 'XMatrixList'
    ID(x)
    ## S4 method for signature 'XMatrixList'
    name(x)
    ## S4 method for signature 'XMatrixList'
    bg(x)
    ## S4 method for signature 'XMatrixList'
    tags(x)
    ## S4 method for signature 'XMatrixList'
    name(x)
    ## S4 method for signature 'XMatrixList'
    strand(x)

### Arguments

`...` | The `XMatrix` objects are supplied in ....
`use.names` | A logical value. When TRUE, the names of the `XMatrix` will be kept.
`x` | A `XMatrixList` object.

### Value

A `XMatrixList` object.

### Author(s)

Ge Tan

### See Also

`XMatrix`,

### Examples

        data(MA0003.2)
        data(MA0004.1)

        ## Construction of PFMatrixList
        pfmList <- PFMatrixList(pfm1=MA0003.2, pfm2=MA0004.1, use.names=TRUE)

        ## Construction of PFM<atrixList from list of PFMatrix
        pfmList <- do.call(PFMatrixList, list(pfm1=MA0003.2, pfm2=MA0004.1))

[Package TFBSTools version 1.28.0 Index]