deleteMatrixHavingID {TFBSTools} | R Documentation

## JASPAR database operations

### Description

The functions to initialize, store matrix or delete matrix in JASPAR database.

### Usage

      ## S4 method for signature 'character'
    deleteMatrixHavingID(x, IDs)
      ## S4 method for signature 'SQLiteConnection'
    deleteMatrixHavingID(x, IDs)
      ## S4 method for signature 'JASPAR2014'
    deleteMatrixHavingID(x, IDs)
      ## S4 method for signature 'character,PFMatrixList'
    storeMatrix(x, pfmList)
      ## S4 method for signature 'SQLiteConnection,PFMatrixList'
    storeMatrix(x, pfmList)
      ## S4 method for signature 'JASPAR2014,PFMatrixList'
    storeMatrix(x, pfmList)
      ## S4 method for signature 'character,PFMatrix'
    storeMatrix(x, pfmList)
      ## S4 method for signature 'SQLiteConnection,PFMatrix'
    storeMatrix(x, pfmList)
      ## S4 method for signature 'JASPAR2014,PFMatrix'
    storeMatrix(x, pfmList)
      ## S4 method for signature 'SQLiteConnection'
    initializeJASPARDB(x, version=c("2014", "2016", "2018", "2020"))
      ## S4 method for signature 'character'
    initializeJASPARDB(x, version=c("2014", "2016", "2018", "2020"))
      ## S4 method for signature 'JASPAR2014'
    initializeJASPARDB(x, version)
      ## S4 method for signature 'JASPAR2016'
    initializeJASPARDB(x, version)
      ## S4 method for signature 'JASPAR2018'
    initializeJASPARDB(x, version)
      ## S4 method for signature 'JASPAR2020'
    initializeJASPARDB(x, version)

### Arguments

`x` | A character vector of length 1 for the path of JASPAR SQLite file, or a `SQLiteConnection` object.
`IDs` | JASPAR stable IDs.
`pfmList` | The PFMatrixList object, or pfm object.
`version` | Which version of JASPAR to create. So far, it supports 2014, 2016 and 2018.

### Value

If the operation works, a "success" will be returned.

### Examples

      initializeJASPARDB("jaspar.sqlite", version="2014")
      data("MA0043")
      storeMatrix("jaspar.sqlite", MA0043)
      deleteMatrixHavingID("jaspar.sqlite","MA0043.1")
      file.remove("jaspar.sqlite")

[Package TFBSTools version 1.28.0 Index]