ExactSelect             Model for identifying erroneously linked pairs
GlobalSelect            Model for identifying erroneously linked pairs
LinkedPairs-class       Tables of where syntenic hits link pairs of
                        genes
LocalSelect             Model for identifying erroneously linked pairs
NucleotideOverlap       Tabulating Pairs of Genomic Sequences
PairSummaries           Summarize connected pairs in a LinkedPairs
                        object
gffToDataFrame          Generate a DataFrame of gene calls from a gff3
                        file
