addlegend {Sushi} | R Documentation

## adds a legend to a Sushi plot

### Description

This function adds a legend to Sushi plots that have a colorby function (e.g. plotHic, plotGenes, and plotBedpe)

### Usage

    addlegend(range, title = "", labels.digits = 1, palette = topo.colors,
      side = "right", labelside = "left", xoffset = 0.1, width = 0.05,
      bottominset = 0.025, topinset = 0.025, tick.num = 5,
      tick.length = 0.01, txt.font = 1, txt.cex = 0.75, title.offset = 0.05,
      title.font = 2, title.cex = 1)

### Arguments

`range` | the rang of values to be plotted. ie c(min,max)
`title` | title of values to be mapped
`labels.digits` | Number of digits after the decimal point to include in labels
`palette` | color palette to use
`side` | side of plot to place legend ('right','left')
`labelside` | side of legend to place legend title
`xoffset` | fraction of plot to offset the legend
`width` | width as a fraction of the plot width
`bottominset` | inset from the bottom of the blot as a fraction of the plot width
`topinset` | inset from the top of the blot as a fraction of the plot width
`tick.num` | desired number of tickmarks
`tick.length` | length of tick marks
`txt.font` | font type of legend text
`txt.cex` | font size of legned text
`title.offset` | offset of title from the key
`title.font` | font type of legend title
`title.cex` | font size of legned text

### Examples

    data(Sushi_HiC.matrix)

    chrom            = "chr11"
    chromstart       = 500000
    chromend         = 5050000

    phic = plotHic(Sushi_HiC.matrix,chrom,chromstart,chromend,max_y = 20,zrange=c(0,28),palette = topo.colors,flip=FALSE)

    labelgenome(chrom,chromstart,chromend,side=1,scipen=20,n=4,scale="Mb",edgeblankfraction=0.20,line=.18,chromline=.5,scaleline=0.5)

    addlegend(phic[[1]],palette=phic[[2]],title="score",side="right",bottominset=0.4,topinset=0,xoffset=-.035,labelside="left",width=0.025,title.offset=0.035)

[Package Sushi version 1.28.0 Index]