012bbb6f6f4a13dd37ddbab6faf808e6 *DESCRIPTION
ff0c58e099d324882b6366f6e563cdf8 *INDEX
021999251bb5bc3b364e46ffe64c3a9d *Meta/Rd.rds
1d15b8cd6573641f81c4126b0438e9c2 *Meta/features.rds
edeea8661c1be642f2d4d40ed23da34c *Meta/hsearch.rds
7cd26c4302ba71c71ef094cb30ebb56a *Meta/links.rds
e3ee9acd1b505a83179391d92e9c6444 *Meta/nsInfo.rds
6e645efa7bc331c5f812729d53f3fa30 *Meta/package.rds
732d94427827e8da68f83169d9524917 *Meta/vignette.rds
24e9c08932a70f2075092cde33a08806 *NAMESPACE
188521dc51287dda57889dd35ef026d4 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/StructuralVariantAnnotation
203f6227ef33da4d81f6c56ccdb1a50f *R/StructuralVariantAnnotation.rdb
277b8c3074be227abd340a6b9c0e210c *R/StructuralVariantAnnotation.rdx
1891dbf87ca9fce1945b16dd64840348 *doc/index.html
84040ad0382d4c1063764ca01a8f3a22 *doc/vignettes.R
613381b334bc5080887c5b3757c55ec2 *doc/vignettes.Rmd
1dfa374a4b884edac22af8d2e371961d *doc/vignettes.html
12ee44ba494bc06baa7369469700f7c8 *extdata/COLO829T.purple.sv.ann.vcf.gz
683caf164bb74e29552f0177e876add2 *extdata/breakdancer-1.4.5.vcf
feeaad3d5ec237cff7761c7d04431b78 *extdata/breakend.vcf
2ab83f00d360b12f5cece00c82e5c0b0 *extdata/crest.vcf
c972e2f7fde3e39dcafa159e96732617 *extdata/delly-0.6.8.vcf
351814da6dd730c526944416ce048706 *extdata/gridss-missingPartner.vcf
4927fa10b4842cfa4ba38c9d5fc7d8c8 *extdata/gridss-na12878.vcf
cc82ed7e26d2d0490714f9c52882a605 *extdata/gridss.bedpe
5e5ae0f5c15eef2943d75b9168031c47 *extdata/gridss.vcf
8cd93102afc733e1f81cd323eacf21c5 *extdata/manta-0.29.6.vcf
1cf2f3eda533b5cd761a71a78cac7ad7 *extdata/manta-1.1.1.vcf
cb53d99797872f13ba066e3551a6d3d2 *extdata/multipleAltSVs.vcf
7b54dafc7a0b36ddaa85c861e745b8f9 *extdata/na12878_chr22_Sudmunt2015.vcf
ebbaf305e07754a431a7200b122a8561 *extdata/na12878_chr22_crest.vcf
63206a566ee14bcb7fedd85e214a9f10 *extdata/na12878_chr22_hydra.vcf
489550bafad9c87b6441721b379966a6 *extdata/pindel-0.2.5b6.vcf
fbb8e101fb854f488c4f26df2b490451 *extdata/simple.vcf
a489a6898e1a6c617b09baa2f0fbc037 *extdata/tigra-0.3.7.vcf
a0a6d82bbcd08187186af68b4c339819 *extdata/unnamed.bedpe
27f53f9124a138ed7da6181719f34881 *extdata/vcf4.2.example.sv.vcf
79afebcf08a7447657a4e9feef4f1496 *help/AnIndex
4ffa74200ed3a6b3193c94db05cc25ea *help/StructuralVariantAnnotation.rdb
845c3b5a0d64dd628d48700c984d5c7f *help/StructuralVariantAnnotation.rdx
356042b78169a6a3512c2491758f9983 *help/aliases.rds
8dbdf9622a2d9eebef994204f9061446 *help/paths.rds
c37e59d115a88d07c9c3167cc19f1dc1 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
cd8b540df26799653327b69cb9efa73c *html/StructuralVariantAnnotation.html
610d68fc1321d3d5aa48a9ed139345f3 *html/align_breakpoints.html
5ed82b125c63c18f7ae0a5f142237c9a *html/breakendRanges.html
81cf2b5d1f1ca0b418aa1f03c89f3f9d *html/breakpointGRangesToVCF.html
04523342394ac1807611cf91cf612012 *html/breakpointRanges.html
fcb1463d08dd412fc44c237671e459c0 *html/breakpointgr2bedpe.html
4c2c5cbc7b68946f52f58b2276d04855 *html/calculateReferenceHomology.html
d8d36ad065748fb43f6e29cb14985b29 *html/countBreakpointOverlaps.html
ca965ec44c3ab8e09b214c238e20e0ff *html/dot-constrict.html
4f677fcf5d1960853c564d578c19d08c *html/dot-isSymbolic.html
e1c0c9d3035735f876a47bea1e9d393a *html/dot-pairwiseLCPrefix.html
4541a59daaa5a380252fb56eca576744 *html/dot-svLen.html
2a18caf220c695e67b8e2acdd8bbd8e7 *html/dot-testfile.html
2f95ed926ff43a13c9eda1ad1ebfde2e *html/dot-testrecord.html
73b4096326669590d048e80ed0020fc5 *html/dot-toVcfBreakendNotationAlt.html
fe55b094718a2053c49937631fa0005f *html/dot-unXStringSet.html
ce1d6b0069bcb5d23fa4b58be77ae8a9 *html/elementExtract.html
63788b9cf1ad2b5cf709a9d7a8af921f *html/extractBreakpointSequence.html
1176bc94e99ecf24a992f5c9c732bee5 *html/extractReferenceSequence.html
f540a464035b077c57417c60538da26c *html/findBreakpointOverlaps.html
1f5620859f277857a624bbfa9034fdc8 *html/findInsDupOverlaps.html
a3f9bfd5a27496ba7b904f2da0098457 *html/grapes-na-grapes.html
43f006dba2ccd700d9a00f1b1f229f08 *html/grapes-null-grapes.html
86c5914d90c059b3da7f72c9c889667e *html/isStructural.html
460ee8ef8cad64c6110d82f179f76a52 *html/isSymbolic.html
d2ca2de558b0e3de956b3dbd660272dc *html/pairs2breakpointgr.html
311b9fcf56eb65d81b8f998eb2aad98f *html/partner.html
56728a969916c4962c5acadba13c4c64 *html/simpleEventLength.html
d12127f13ba8d524103d91f52600a200 *html/simpleEventType.html
