pedigree {SeqVarTools} | R Documentation

## Pedigree for example data

### Description

Pedigree for example data files in SeqArray.

### Usage

    pedigree

### Format

A data.frame with the following columns.

`family`

  Family ID

`individ`

  Individual ID

`father`

  Father ID

`mother`

  Mother ID

`sex`

  Sex

`sample.id`

  sample.id in VCF/GDS files

### Details

There is one trio in the pedigree.

### Source

HapMap

### Examples

    data(pedigree)
    head(pedigree)
    gds <- seqOpen(seqExampleFileName("gds"))
    setdiff(seqGetData(gds, "sample.id"), pedigree$sample.id)
    seqClose(gds)

[Package SeqVarTools version 1.28.1 Index]