aeab950bee58fcca0c51dab3766b6a3e *CITATION
bf6efdfa970888fb511dd90fbcddbfa6 *DESCRIPTION
eb4e7591368c76f0496fbdb16d0d016b *INDEX
ab6985e50ffa800b915517c98f9a6e6a *Meta/Rd.rds
858a5b3a708e2d412bf9bdeca4e73a52 *Meta/data.rds
1d15b8cd6573641f81c4126b0438e9c2 *Meta/features.rds
7352dcceb3c4b9f46279a299c452760e *Meta/hsearch.rds
daaeaca99728ef762a07b482031862eb *Meta/links.rds
70ceb7c18b7af6b2293be469e8b862fc *Meta/nsInfo.rds
475b313ac892b5f90e53cf7afcfb1376 *Meta/package.rds
2720d4362bf40e2a8d491a3d1572e850 *Meta/vignette.rds
4c068cc3d0d28139f5ef50700dd174bb *NAMESPACE
eee0094f742a2e898fa42f2687ae08d5 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/SeqGSEA
c8a5d0ce592efe109bf12eb47e65779f *R/SeqGSEA.rdb
2b56d5d3c227e3c8901055095b88468d *R/SeqGSEA.rdx
0de951c8acb635491137dd18ea274d3c *data/DEscore.RData
f428a2fb01a1897186df10ac9200cb88 *data/DEscore.perm.RData
01eb20f550590c90a09c3c66be19cfe3 *data/DSscore.RData
0dde568ce46206f2cdfd093e657ec717 *data/DSscore.perm.RData
1329bfa58cd12a17be862b75e63f0d28 *data/GS_example.RData
32415601bef23b9cd7a3f287920787e2 *data/RCS_example.RData
503f9f527192840a4197a568c15c9523 *doc/SeqGSEA.R
e1ae461c8dd63eb42cd0011451272c01 *doc/SeqGSEA.Rnw
451d94ff6663e98f5deda7bf8f1a78ac *doc/SeqGSEA.pdf
afa83dbacb8ca9adc13efb1d47d56ee4 *doc/index.html
aa55e94bc8a566642e2185b96a3af157 *extdata/SC02.exonCnt.txt
0db4255cfc2712875daef3b4cad2fb30 *extdata/SC03.exonCnt.txt
a5b3f6a1fd87583872c6e125787769a0 *extdata/SC06.exonCnt.txt
46c91a7af23910fcec920eba62d31181 *extdata/SC08.exonCnt.txt
7e5ce78db9689017625c617ef766d9a7 *extdata/SC09.exonCnt.txt
50040700402df45704b7818bdaa5939c *extdata/SC11.exonCnt.txt
8e9b647d49feb3eeebf4f08cacfaa264 *extdata/SC13.exonCnt.txt
744f526772bc3c5e2339960a069fc5b9 *extdata/SC15.exonCnt.txt
9cbbedac1f57b91f4d54fcd0dcbea92e *extdata/SC19.exonCnt.txt
cf06c735cdfcd748ae4952306916f00b *extdata/SC23.exonCnt.txt
82ea07828e987a34016fd6df0a0ae8b7 *extdata/SN02.exonCnt.txt
69dbf83514ff2e35b2e049fb682598b9 *extdata/SN03.exonCnt.txt
d7d5badfedd65d3be5afc63b7b8ad767 *extdata/SN06.exonCnt.txt
4d1b6d41d721cb6e4c7568da2f374976 *extdata/SN08.exonCnt.txt
92d7d1a7b75d1553e25fd7c6716185da *extdata/SN09.exonCnt.txt
56e14a678cad226729b15bfe71ebcdb8 *extdata/SN11.exonCnt.txt
b55cbbb76d20758c07cb8acadab0bac6 *extdata/SN13.exonCnt.txt
ba8e84b422451b2cb406e271f6ecf700 *extdata/SN15.exonCnt.txt
e4de0cb79dae4a7617e82b961cba6c14 *extdata/SN19.exonCnt.txt
45b051c29bb812d73224c2e5db2e33d6 *extdata/SN23.exonCnt.txt
99a21bc95ce21d5613695746794ff2c3 *extdata/geneCounts.txt
e10c7313a4977ab1016ee89dca648b14 *extdata/gs_symb.txt
c4beb55cebd8c597c3193a087ae50783 *extscripts/count_in_exons.py
2849d48898b0f98630609b8806b285fc *extscripts/prepare_exon_annotation_ensembl.py
3fd83cc194195f2ccbff8d751d4c7463 *extscripts/prepare_exon_annotation_refseq.py
3bcbbcf1c2ac6c414599721cd3b11fa7 *help/AnIndex
d20f3e65a565dce6a51d7eafe5e11c23 *help/SeqGSEA.rdb
b73c677f0ebadadb9644393a6df21f46 *help/SeqGSEA.rdx
b6d9350f3d1d1b78f416d0170a3f19a4 *help/aliases.rds
d13009e5293f24bff756975d423435cc *help/paths.rds
0e368dd1538ef764f4bce42909c5c2bf *html/00Index.html
e24663d4c445f3d0599048f6850f2571 *html/DENBStat4GSEA.html
d5631b357830c66f340d56071202a3d2 *html/DENBStatPermut4GSEA.html
acae3cde0e4c1ea76dd5d6e3d6606867 *html/DENBTest.html
13511da416a7b08d4175cea384827b9d *html/DEpermutePval.html
cf2d1af7d74f5916621193d1105a8e30 *html/DEscore.html
2d86826b6f2018f52d1762422d7cb251 *html/DSpermute4GSEA.html
79699277ec55b4af82861584e6621fbe *html/DSpermutePval.html
bebaaf938fb0e68c4717437e736da49d *html/DSresultExonTable.html
94004b999d171f55c2f1d1ff2355918e *html/DSresultGeneTable.html
2343d7f5807269172b1e5a138ae74a14 *html/GSEAresultTable.html
b2e0b8083b9dc1ad2f5ad2f052c8392b *html/GSEnrichAnalyze.html
d244f89bad4d6686ae514d5c991dfecd *html/GS_example.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
ea0d6622b9e6882a980fb5fd77200af3 *html/RCS_example.html
c97ce6da1dd33278f74752193435c371 *html/ReadCountSet-class.html
a34f6211346ba22af6ebc1b36c6a0657 *html/SeqGSEA-package.html
be4a60b87601ec7e17327f12606f013a *html/SeqGeneSet-class.html
acac336e5eb6cd4365701880ffa23497 *html/calES.html
0aee448d87760da24ceceaa4892cf4cf *html/calES.perm.html
170643af87c5c139cd5ea4ac5d86462a *html/convertEnsembl2Symbol.html
52aab6c190d7b359affcac0cbc0c7771 *html/convertSymbol2Ensembl.html
d3663cefd0e8d59f90b246267263dedd *html/counts-methods.html
0de066cbe323f17f38c94de32006b098 *html/estiExonNBstat.html
f0f2bb8c47cbbe5906f3f89e424cc4f4 *html/estiGeneNBstat.html
611ddb3734b821c7de74b6c05068aeaf *html/exonID.html
75ce0c8ca91a22e86dc8b99dd1a0c883 *html/exonTestability.html
205c6cb2b24531825e712e9f9aff1b6c *html/geneID.html
c3b7524642d7c5112a9dd69c4740a875 *html/geneList.html
658468c5b510110f93e94fec9258f2ad *html/genePermuteScore.html
09a2622b69cc515b26d40783df37d873 *html/geneScore.html
eacb93c5aa2a1663be5fe044e74b89c4 *html/geneSetDescs.html
cef7658c2915fa00dffe33f973fa45eb *html/geneSetNames.html
e8a1fb8fd9607c5526d028f673e58965 *html/geneSetSize.html
5a41116264c09ae642f16b06ec9d9fe8 *html/geneTestability.html
7e442e5d820c58f05d5a3eddbe899fea *html/genpermuteMat.html
b2397a8b23d7641dd7c387e4e6d2f730 *html/getGeneCount.html
f4c56a3cfd29630b0df895020df926ef *html/label.html
c05afd4430e4c9591539f8251217d2d0 *html/loadExonCountData.html
38c9375d8e4a902c1d332fef4a44235a *html/loadGenesets.html
33ecdcd9d21d5746a914b7efd4c6b52b *html/newGeneSets.html
aeb7b82f6d9e8861d64993da995bef8d *html/newReadCountSet.html
c49e7624b8696658a97764389d87849d *html/normES.html
16bbb51897b19d45585a0d47baf1092b *html/normFactor.html
d78f02ddef7be6292946a38823c66518 *html/plotES.html
67494b92c3507c40b8af45381fae0587 *html/plotGeneScore.html
c3d5ca973efed1e334b0298f15585388 *html/plotSig.html
97ac45d0e893f3841b4533ba86f33702 *html/plotSigGeneSet.html
66630b6a622978dfc384f9311beda73f *html/rankCombine.html
a373e80ad7b04a7a0b40c9755edce62d *html/runDESeq.html
e56dc0ae1a555751a0130c18d2235e27 *html/runSeqGSEA.html
bf4d6652bf772bc90dc11fd837ef9bb0 *html/scoreNormalization.html
56edb147d5729550fa2e8d085ca41e7c *html/signifES.html
e5ce846cf2cf0580a0cea91d5d27e644 *html/size.html
4de195776f70ccd805df5ad9dc410a3b *html/subsetByGenes.html
c52478b42ac20892054fcae79a28e046 *html/topDEGenes.html
c99442940d6868b1fca4d7093f161266 *html/topDSExons.html
882d905bb659415570e767400a20c578 *html/topDSGenes.html
e5cff23947c6e94f69873c67dd4ed64c *html/topGeneSets.html
761b7aaec060ebf9e3c65bddfda6afa7 *html/writeScores.html
2635db94c8c9fc891d00985f3b6b4f72 *html/writeSigGeneSet.html
