geneTestability {SeqGSEA} | R Documentation

## Check gene testability

### Description

This function is to determine each gene's testability. A gene is testable if at least one of its exons are testable.

### Usage

    geneTestability(RCS)

### Arguments

`RCS` | a ReadCountSet object after exon testability checked, usually the output of `exonTestability`.

### Details

This result can applied to filter out genes not expressed.

### Value

A logical vector indicating which genes are testable, i.e., having at least one exon testable.

### Note

Please run `exonTestability` before run this function.

### Author(s)

Xi Wang, xi.wang@newcastle.edu.au

### See Also

`exonTestability`, `subsetByGenes`

### Examples

    data(RCS_example, package="SeqGSEA")
    RCS_example <- exonTestability(RCS_example, cutoff=5)
    geneTestable <- geneTestability(RCS_example)
    head(geneTestable)

[Package SeqGSEA version 1.30.0 Index]