newReadCountSet {SeqGSEA} | R Documentation

## Generate a new ReadCountSet object

### Description

This is a internal function to generate a new ReadCountSet object.

### Usage

    newReadCountSet(readCounts, exonIDs, geneIDs)

### Arguments

`readCounts` | a data frame, read counts for each exon of each samples. Must have colnames, which indicate the label of samples.
`exonIDs` | a character vector indicating exon IDs.
`geneIDs` | a character vector indicating gene IDs.

### Value

A object of the ReadCountSet class.

### Author(s)

Xi Wang, xi.wang@newcastle.edu.au

### See Also

`loadExonCountData`, `ReadCountSet-class`

### Examples

    rcounts <- cbind(t(sapply(1:10, function(x) {rnbinom(5, size=10, prob=runif(1))} ) ) ,
                     t(sapply(1:10, function(x) {rnbinom(5, size=10, prob=runif(1))} ) ) )
    colnames(rcounts) <- c(paste("S", 1:5, sep=""), paste("C", 1:5, sep=""))
    geneIDs <- c(rep("G1", 4), rep("G2", 6))
    exonIDs <- c(paste("E", 1:4, sep=""), paste("E", 1:6, sep=""))
    ##
    RCS <- newReadCountSet(rcounts, exonIDs, geneIDs)
    RCS
    ## End

[Package SeqGSEA version 1.30.0 Index]