GSEAresultTable {SeqGSEA} | R Documentation

## Form a table for GSEA results

### Description

Form a table for GSEA results.

### Usage

    GSEAresultTable(gene.set, GSDesc = FALSE)

### Arguments

`gene.set` | a SeqGeneSet object after running `GSEnrichAnalyze`.
`GSDesc` | logical indicating whether to output gene set descriptions. default: FALSE

### Value

A data frame containing columns of GSName, GSSize, ES, ES.pos, pval, FDR, and FWER.

### Author(s)

Xi Wang, xi.wang@newcastle.edu.au

### See Also

`GSEnrichAnalyze`, `topGeneSets`

### Examples

    data(DEscore, package="SeqGSEA")
    data(DSscore, package="SeqGSEA")
    gene.score <- geneScore(DEscore, DSscore, method="linear", DEweight = 0.3)
    data(DEscore.perm, package="SeqGSEA")
    data(DSscore.perm, package="SeqGSEA")
    gene.score.perm <- genePermuteScore(DEscore.perm, DSscore.perm, method="linear",  DEweight=0.3)
    data(GS_example, package="SeqGSEA")
    GS_example <- GSEnrichAnalyze(GS_example, gene.score, gene.score.perm)
    head(GSEAresultTable(GS_example))

[Package SeqGSEA version 1.30.0 Index]