exonTestability {SeqGSEA} | R Documentation

## Check exon testability

### Description

Check exon testability, filtering out exons with very few (default: 5) read counts

### Usage

    exonTestability(RCS, cutoff = 5)

### Arguments

`RCS` | a ReadCountSet object.
`cutoff` | exons with read counts less than this cutoff are to be marked as untestable.

### Value

a ReadCountSet object with slot `fData` updated.

### Author(s)

Xi Wang, xi.wang@newcastle.edu.au

### See Also

`geneTestability`

### Examples

    data(RCS_example, package="SeqGSEA")
    RCS_example <- exonTestability(RCS_example, cutoff=5)
    head(fData(RCS_example))

[Package SeqGSEA version 1.30.0 Index]