generateEvalPlot {SCnorm} | R Documentation

## Internal plotting function.

### Description

Genes are divided into NumExpressionGroups = 10 equally sized groups based on their non-zero median expression. Slope densities are plot for each group.

### Usage

    generateEvalPlot(
      MedExpr,
      SeqDepth,
      Slopes,
      Name,
      NumExpressionGroups = 10,
      BeforeNorm = TRUE
    )

### Arguments

`MedExpr` | non-zero median expression for all genes.
`SeqDepth` | sequencing depth for each cell/sample.
`Slopes` | per gene estimates of the count-depth relationship.
`Name` | name for plot title.
`NumExpressionGroups` | the number of groups to split the data into, genes are split into equally sized groups based on their non-zero median expression.
`BeforeNorm` | whether dat have already been normalized.

### Value

a plot of the un-normalized slope densities.

### Author(s)

Rhonda Bacher

[Package SCnorm version 1.12.1 Index]