TopNetwork-class {RegEnrich} | R Documentation

## TopNetwork class

### Description

The 'TopNetwork' object is to store either a full network (the percentage of top edges is 100 between 0 to 10).

### Slots

`element`

  tibble, the pool of targets in the network.

`set`

  tibble, the pool of valid regulators.

`elementset`

  tibble, regulator-target edges with edge weights. and the elements are regulators of the targets indicated by the element name.

`directed`

  logical, whether the network is directed.

`networkConstruction`

  character, by which method this network is constructed. Either 'COEN' (coexpression network using WGCNA), or 'GRN' (gene regulatory network using random forest), or 'new' (a network provided by the user).

`percent`

  numeric, what percentage of the top edges are remained. The value must be between 0 (excluding) and 100 (including).

`active`

  character, which data table is activated, the default is "elementset".

[Package RegEnrich version 1.0.1 Index]