# Gene regulator enrichment analysis

## Documentation for package ‘RegEnrich’ version 1.0.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

DeaSet-class | DeaSet class
dim-method | dimention of 'TopNetwork' object
Enrich-class | Enrich class
getResultsNames | Inference the name of results of DESeq analysis by a formula (or model matrix) and sample information
head-method | head or tail of Score object
Lyme_GSE63085 | Example RNAseq dataset [Human]
newDeaSet | DeaSet object creator
newScore | Score class
newTopNetwork | TopNetwork object creator
plotOrders | Compare the orders of two vectors
plotRegTarExpr | Plot regulator and its targets expression
plotSoftPower | Plot soft power for WGCNA analysis
plot_Enrich | Plot results of FET/GSEA enrichment analysis
plot_Enrich-method | Plot results of FET/GSEA enrichment analysis
print.Score | Print Score object
RegenrichSet | RegenrichSet object creator
RegenrichSet-class | RegenrichSet class
regenrich_diffExpr | Differential expression analysis step
regenrich_diffExpr-method | Differential expression analysis step
regenrich_enrich | Enrichment analysis step
regenrich_enrich-method | Enrichment analysis step
regenrich_network | Regulator-target network inference step
regenrich_network-method | Regulator-target network inference step
regenrich_network<- | Regulator-target network inference step
regenrich_network<--method | Regulator-target network inference step
regenrich_rankScore | Regulator scoring and ranking
regenrich_rankScore-method | Regulator scoring and ranking
results_DEA | Result accessor functions
results_enrich | Result accessor functions
results_expr | Result accessor functions
results_score | Result accessor functions
results_topNet | Result accessor functions
Score-class | Score class
show-method | methods of generic function "show"
tail-method | head or tail of Score object
TFs | Human gene regulators
TopNetwork-class | TopNetwork class