\name{RTN-News}
\title{RTN News}
\encoding{UTF-8}

\section{Version 2.12.0}{
  \itemize{
    \item Regular maintenance, stable release.
  }
}

\section{Version 2.10.0}{
  \itemize{
    \item Regular maintenance, stable release.
  }
}

\section{Version 2.8.0}{
  \itemize{
    \item Regular maintenance, stable release.
  }
}

\section{Version 2.6.0}{
  \itemize{
    \item Make available GSEA-2T and aREA-3T algorithms for single-sample analysis.
  }
}

\section{Version 2.4.0}{
  \itemize{
    \item Improved RTN workflows.
  }
}

\section{Version 2.2.0}{
  \itemize{
    \item Improved annotation slots for TNA/TNI classes.
  }
}

\section{Version 1.14.0}{
  \itemize{
    \item Concluded the VSE/EVSE pipeline, including examples.
    \item Improved computational performance and RTN workflows.
    \item {In order to improve stability and portability, all dependencies have 
    been extensively revised and, when available, replaced with more stable options.
    }
    \item { In order to simplify documentation and usability, some pipelines have 
    been revised and should be distributed as separated packages, or 'on demand', 
    focused on the main workflow, as for example the new 'RTNduals' package.
    }
  }
}

\section{Version 1.12.0}{
  \itemize{
    \item Improved computational performance and RTN workflows.
    \item Introduced partial correlation metric to derive regulons.    
  }
}

\section{Version 1.10.0}{
  \itemize{
    \item Improved computational performance and RTN workflows.
  }
}

\section{Version 1.8.0}{
  \itemize{
    \item Improved computational performance and RTN workflows.
  }
}

\section{Version 1.6.0}{
  \itemize{
    \item Improved computational performance for permutation analysis and other parallel processing pipelines.
    \item Fix a phyper function issue.
  }
}

\section{Version 1.4.0}{
  \itemize{
    \item Introduced 2-tailed GSEA and other related methods.
  }
}

\section{Version 1.2.0}{
  \itemize{
    \item Introduced variant set enrichment analysis for regulons.
  }
}

\section{Version 1.0.0}{
  \itemize{
    \item 1st Bioconductor release of RTN [2013-10-15].
  }
}
