msmsWorkspace-class {RMassBank} | R Documentation

## Workspace for `msmsWorkflow` data

### Description

A workspace which stores input and output data for `msmsWorkflow`.

### Usage

    ## S4 method for signature 'msmsWorkspace'
    show(object)

### Arguments

`object` | The `msmsWorkspace` to display.

### Details

Slots:

files

  The input file names

spectra

  The spectra per compound (`RmbSpectraSet`) extracted from the raw files

aggregated

  A data.frame with an aggregated peak table from all `spectra`. Further columns are added during processing.

rc, rc.ms1

  The recalibration curves generated in workflow step 4.

parent

  For the workflow steps after 4: the parent workspace containing the state (spectra, aggregate) before recalibration, such that the workflow can be reprocessed from start.

archivename

  The base name of the files the archive is stored to during the workflow.

settings

  The RMassBank settings used during the workflow, if stored with the workspace.

#'

Methods:

show

  Shows a brief summary of the object and processing progress.

### Author(s)

Michael Stravs, Eawag <michael.stravs@eawag.ch>

### See Also

`msmsWorkflow`

[Package RMassBank version 3.0.0 Index]