estNBparamsNoLab {RCM} | R Documentation

## A function to estimate the NB-params ignoring the taxon labels

### Description

A function to estimate the NB-params ignoring the taxon labels

### Usage

    estNBparamsNoLab(
      design,
      thetasMat,
      muMarg,
      psi,
      X,
      nleqslv.control,
      initParam,
      n,
      v,
      dynamic,
      envRange,
      preFabMat,
      allowMissingness,
      naId
    )

### Arguments

`design` | an n-by-v design matrix
`thetasMat` | A matrix of dispersion parameters
`muMarg` | an offset matrix
`psi` | a scalar, the importance parameter
`X` | the data matrix
`nleqslv.control` | a list of control elements, passed on to nleqslv()
`initParam` | a vector of length v of initial parameter estimates
`n` | an integer, the number of samples
`v` | an integer, the number of parameters per taxon
`dynamic` | a boolean, should response function be determined dynamically? See details
`envRange` | a vector of length 2, giving the range of observed environmental scores
`preFabMat` | a pre-fabricated auxiliary matrix
`allowMissingness` | A boolean, are missing values present
`naId` | The numeric index of the missing values in X If dynamic is TRUE, quadratic response functions are fitted for every taxon. If the optimum falls outside of the observed range of environmental scores, a linear response function is fitted instead

### Value

a v-by-p matrix of parameters of the response function

[Package RCM version 1.6.0 Index]