d899626bfdd384dd91c8b8199e8faa4f *CITATION
4e3cfd6b5e3a056964537e34d3f31674 *DESCRIPTION
1dbe7b0ff56e77e3512ff1a7ebb7c9a0 *INDEX
a86fcce23d181650bc00dfac386750ce *Meta/Rd.rds
86e340ba17cdd25cfa2a9dddddcb05fa *Meta/data.rds
1d15b8cd6573641f81c4126b0438e9c2 *Meta/features.rds
63d82ad115a1e66660f272a4e1edc8fb *Meta/hsearch.rds
7e2b1bc7eef4ea5ccb5161b9b5286116 *Meta/links.rds
f1d84c4228ded57c518121482bcf78bb *Meta/nsInfo.rds
bff98480921d09962d426f9dce5c17f7 *Meta/package.rds
f79589bc521d0e68cba0b4334959b1e3 *Meta/vignette.rds
58c0afe02db9cfda1cef65bbe6f36f92 *NAMESPACE
200b15327638f2e7195e16f75e71a1b8 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/RCAS
fd69a2897fd708f0df6ba387dd5c61ed *R/RCAS.rdb
401abdb244b585e99ff12e1ecda7c31e *R/RCAS.rdx
c6e66dc05ca42ed11bd13b3b00c9348a *data/Rdata.rdb
ac48dacf89393a674d34366e1d9bd990 *data/Rdata.rds
0778450a22101249135d335c13dbe7ae *data/Rdata.rdx
aa61ceef33ed2d9e60b6599aa703e650 *doc/RCAS.metaAnalysis.vignette.R
fe54a2d6bc82f877aea6d5309fd7b999 *doc/RCAS.metaAnalysis.vignette.Rmd
a6a603e3773f2321123862db99253470 *doc/RCAS.metaAnalysis.vignette.html
40024b0f437bd42061ed9bccd2366166 *doc/RCAS.vignette.R
b11338cf28963b52692f3002695100fa *doc/RCAS.vignette.Rmd
24a20eb8912c8481e13e9dd2a1fedaea *doc/RCAS.vignette.html
247e560902e4d56eb3cc2fe9bec32180 *doc/index.html
4f8573e5f8b697319117c88327a4a236 *extdata/EIF4A3Sauliere20121a.bed
2779ca3ab60fcb8e560e86978c5aa1d2 *extdata/EIF4A3Sauliere20121b.bed
32aa8a32aa4b0b1b69dd340437d6e924 *extdata/FMR1_Ascano2012a_hg19.bed
d4d7442832f9b1d40ed3bb589326839a *extdata/FMR1_Ascano2012b_hg19.bed
5ae985d0d00b8dbc5c4e51481d2799b4 *extdata/FUS_Nakaya2013c_hg19.bed
53ec61cdf36a09a61f64ca31fdf0a0ae *extdata/FUS_Nakaya2013d_hg19.bed
2af4c54bf647b7e46dec40972101443e *extdata/hg19.RCASDB.sqlite
f0de64b19c59a7b202c8faff4d599ace *extdata/hg19.sample.gtf
99fb8d5b4e2fc1a11b4e92d5bd994d05 *extdata/hg19.sample.gtf.granges.rds
aa87ec9a0e15f7849d72747634b911ce *extdata/msigdb_test.gmt
8cea927d9a40a56fbdb778eae43f81e5 *extdata/testfile.bed
8cea927d9a40a56fbdb778eae43f81e5 *extdata/testfile2.bed
833910a2a991e1a7f208a0b24c53e887 *help/AnIndex
537145ba9f891774471ea28474fbd488 *help/RCAS.rdb
4da9a6ee531ff6412cc2493fac366bed *help/RCAS.rdx
176aca9c817529977d69f4100a646593 *help/aliases.rds
85bc194d56c8718c2723d612972250ed *help/paths.rds
bf90a218c6cd08d5cb07fb86ef5c59bc *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
fca0ef8b03cfb61a01972dcd328be33f *html/calculateCoverageProfile.html
7d3d9194376bf3767a8aabe3b235bed4 *html/calculateCoverageProfileFromTxdb.html
12255dbfd538b018264d9aa5ff571dbc *html/calculateCoverageProfileList.html
eee5f23688b1246a796a84adc888cffd *html/calculateCoverageProfileListFromTxdb.html
86041d8eed5f0c7fe2e082b04818ace4 *html/checkSeqDb.html
fcd021f3f321ca1145f04989cfdf9b61 *html/createControlRegions.html
b2d1ff7c4a65edcfccd551f230a1efc3 *html/createDB.html
247d2a6bc40a19252d57f212a6008846 *html/createOrthologousGeneSetList.html
a6f84696f5d58fb1f33a0f2772c1e6bc *html/deleteSampleDataFromDB.html
a5db549dfd7e62a3d5654e8df6c7d521 *html/discoverFeatureSpecificMotifs.html
230950dc72b02f2dd496fb7cea7628e1 *html/extractSequences.html
0c185f0054de08d2e1a8355435b242e8 *html/findDifferentialMotifs.html
43587697e2dfd9aa709f1f4cd7e9475a *html/findEnrichedFunctions.html
4c19e444c813d0a134690d101f7c3abb *html/generateKmers.html
45de8de5a4e15eaedf402657466a6fb2 *html/getFeatureBoundaryCoverage.html
dc1708227a098b5f75be84135cdd9afd *html/getFeatureBoundaryCoverageBin.html
e042297f52673b1aa37b9fb64e9e3c66 *html/getFeatureBoundaryCoverageMulti.html
4afbadc98791151f5eb768986d3102f8 *html/getIntervalOverlapMatrix.html
e1b6c4ff76d5eb73973b95c0b3cd77fb *html/getMotifSummaryTable.html
9a367ee21db2d0923949b1915f11246f *html/getTargetedGenesTable.html
79555933a20ffa4d93844fe7e4bc2147 *html/getTxdbFeatures.html
18adebd2eb3ed9512a06f3261d8e295d *html/getTxdbFeaturesFromGRanges.html
c99e2b93b9ef2b6cb677ef8f640a4003 *html/gff.html
a20fdb0d18836251065a95b0733eb3da *html/importBed.html
8e04858cd4827e9396367e40e7e1598f *html/importBedFiles.html
4c83bd4f5592ff4fd67ce2fc06d21b24 *html/importGtf.html
7c2d472590c220dc024823a5d3888c52 *html/parseMsigdb.html
3ef3921c6e30f002948efb4dfb80771f *html/plotFeatureBoundaryCoverage.html
0d20a20149e8469668b2b84733a23b91 *html/printMsigdbDataset.html
47beecd145553b4b74f14cf7abde2452 *html/queryGff.html
d5d73d5aa344c67b2a8eddc23a2d8b7e *html/queryRegions.html
e8f9123851666b0da43e61ac71667a59 *html/retrieveOrthologs.html
dbae22a52f5afa2e44e2a2eae3a62f49 *html/runGSEA.html
d488e0261973e06c610fde2607587452 *html/runMotifDiscovery.html
0fcc8061bcdd4f2f322dae50553e7318 *html/runMotifRG.html
00be120df5691b9accee4730a5cd31f5 *html/runReport.html
0c7e8a1dfbee509015787890164ce5b9 *html/runReportMetaAnalysis.html
730bcaa6f3214caf2a2dcb9d2e311dff *html/runTopGO.html
5a2f7ce0b8b2ea48cfa1a52b40fe9c2a *html/summarizeDatabaseContent.html
4fa84de08f19fbd3c30e7b9b684ea5e6 *html/summarizeQueryRegions.html
f08714091a686c562c88115235096b37 *html/summarizeQueryRegionsMulti.html
053cf68e09070e277a798b0736fb7874 *reporting_scripts/footer.html
b1442cb874099cb5af45301431024ee0 *reporting_scripts/header.html
6f6f4a2838b6caa7b0590b14c4b7aa03 *reporting_scripts/report.Rmd
a09a306dbdd05abf6f6f854d2cb58f14 *reporting_scripts/reportMetaAnalysis.Rmd
