createCurationFile {PureCN} | R Documentation

## Create file to curate PureCN results

### Description

Function to create a CSV file that can be used to mark the correct solution in the output of a `runAbsoluteCN` run.

### Usage

    createCurationFile(
      file.rds,
      overwrite.uncurated = TRUE,
      overwrite.curated = FALSE
    )

### Arguments

`file.rds` | Output of the `runAbsoluteCN` function, serialized with `saveRDS`.
`overwrite.uncurated` | Overwrite existing files unless flagged as ‘Curated’.
`overwrite.curated` | Overwrite existing files even if flagged as ‘Curated’.

### Value

A `data.frame` with the tumor purity and ploidy of the maximum likelihood solution.

### Author(s)

Markus Riester

### See Also

`runAbsoluteCN`

### Examples

    data(purecn.example.output)
    file.rds <- "Sample1_PureCN.rds"
    saveRDS(purecn.example.output, file=file.rds)
    createCurationFile(file.rds)

[Package PureCN version 1.20.0 Index]