taxonomyTableCreator {PhyloProfile} | R Documentation

## Align NCBI taxonomy IDs of list of taxa into a sorted rank list.

### Description

Align NCBI taxonomy IDs of list of taxa into a sorted rank list.

### Usage

    taxonomyTableCreator(idListFile = NULL, rankListFile = NULL)

### Arguments

`idListFile` | a text file whose each row is a rank+ID list of a taxon (see idListFile in example)
`rankListFile` | a text file whose each row is a rank list of a taxon (see rankListFile in example)

### Value

An aligned taxonomy dataframe which contains all the available taxonomy ranks from the id and rank list file. This dataframe can be used for creating a well resolved taxonomy tree (see ?createRootedTree) and sorting taxa based on a selected reference taxon (see ?sortInputTaxa).

### Author(s)

Vinh Tran tran@bio.uni-frankfurt.de

### See Also

`rankIndexing`, `createRootedTree`, `sortInputTaxa`

### Examples

    idListFile <- system.file(
        "extdata", "data/idList.txt", package = "PhyloProfile", mustWork = TRUE
    )
    rankListFile <- system.file(
        "extdata", "data/rankList.txt", package = "PhyloProfile", mustWork = TRUE
    )
    taxonomyTableCreator(idListFile, rankListFile)

[Package PhyloProfile version 1.4.11 Index]