reduceProfile {PhyloProfile} | R Documentation

## Reduce the filtered profile data into supertaxon level

### Description

Reduce data of the processed phylogenetic profiles from input taxonomy rank into supertaxon level (e.g. from species to phylum)

### Usage

    reduceProfile(filteredProfile)

### Arguments

`filteredProfile` | dataframe contains the filtered profiles (see ?parseInfoProfile, ?filterProfileData and ?filteredProfile)

### Value

A reduced dataframe contains only profile data for the selected supertaxon rank. This dataframe contains only supertaxa and their value (mVar1 & mVar2) for each gene.

### Author(s)

Vinh Tran tran@bio.uni-frankfurt.de

### See Also

`parseInfoProfile` for creating a full processed profile dataframe, `filterProfileData` for filter processed profile and `filteredProfile` for a demo filtered profile dataframe

### Examples

    data("filteredProfile", package="PhyloProfile")
    reduceProfile(filteredProfile)

[Package PhyloProfile version 1.4.11 Index]