superTaxonProfile {PhyloProfile} | R Documentation

## An example of a final phylogenetic profile in supertaxon level.

### Description

An example of a final phylogenetic profile in supertaxon level.

### Usage

    data(superTaxonProfile)

### Format

A data frame with 91 rows and 9 variables:

- geneID Seed or ortholog group ID, e.g. "100136at6656"

- supertaxon Supertaxon name together with its ordered index, e.g. "1001_Mammalia"

- supertaxonID Supertaxon ID (only different than ncbiID in case working with higher taxonomy rank than input's). e.g. "40674"

- var1 First additional variable

- presSpec Percentage of taxa that have ortho in each supertaxon

- category "cat

- orthoID Ortholog ID, e.g. "100136at6656|HUMAN@9606@1|Q9UNQ2|1"

- var2 Second additional variable

- paralog Number of co-orthologs in the current taxon

[Package PhyloProfile version 1.4.11 Index]