clusterDataDend {PhyloProfile} | R Documentation

## Create a hclust object from the distance matrix

### Description

Create a hclust object from the distance matrix

### Usage

    clusterDataDend(distanceMatrix = NULL, clusterMethod = "complete")

### Arguments

`distanceMatrix` | calculated distance matrix (see ?getDistanceMatrix)
`clusterMethod` | clustering method ("single", "complete", "average" for UPGMA, "mcquitty" for WPGMA, "median" for WPGMC, or "centroid" for UPGMC). Default = "complete".

### Value

An object class hclust generated based on input distance matrix and a selected clustering method.

### Author(s)

Vinh Tran tran@bio.uni-frankfurt.de

### See Also

`getDataClustering`, `getDistanceMatrix`, `hclust`

### Examples

    data("finalProcessedProfile", package="PhyloProfile")
    data <- finalProcessedProfile
    profileType <- "binary"
    profiles <- getDataClustering(
        data, profileType, var1AggregateBy, var2AggregateBy)
    distMethod <- "mutualInformation"
    distanceMatrix <- getDistanceMatrix(profiles, distMethod)
    clusterMethod <- "complete"
    clusterDataDend(distanceMatrix, clusterMethod)

[Package PhyloProfile version 1.4.11 Index]