sortDomains {PhyloProfile} | R Documentation

## Sort one domain dataframe based on the other domain dataframe

### Description

Sort domain dataframe of one protein (either seed or ortholog) based on the dataframe of the its paired protein, in order to bring the common domain feature in the same order which make it easy for comparing.

### Usage

    sortDomains(seedDf, orthoDf)

### Arguments

`seedDf` | data of seed protein
`orthoDf` | data of ortholog protein

### Value

Dataframe contains sorted domain list.

### Author(s)

Vinh Tran tran@bio.uni-frankfurt.de

### Examples

    ## Not run:
    # get domain data
    domainFile <- system.file(
        "extdata", "domainFiles/101621at6656.domains",
        package = "PhyloProfile", mustWork = TRUE
    )
    domainDf <- parseDomainInput(seedID, domainFile, "file")
    # get seedDf and orthoDf
    subDf <- domainDf[
        domainDf$seedID ==
        "101621at6656#101621at6656:AGRPL@224129@0:224129_0:001955:1",]
    orthoDf <- subDf[subDf$orthoID == "101621at6656:DROME@7227@1:Q9VG04",]
    seedDf <- subDf[subDf$orthoID != "101621at6656:DROME@7227@1:Q9VG04",]
    # sort
    sortDomains(seedDf, orthoDf)

    ## End(Not run)

[Package PhyloProfile version 1.4.11 Index]