fastaParser {PhyloProfile} | R Documentation

## Parse multi-fasta input file

### Description

Parse multi-fasta input file

### Usage

    fastaParser(inputFile = NULL)

### Arguments

`inputFile` | input multiple fasta file. Check extdata/test.main.fasta or https://github.com/BIONF/PhyloProfile/wiki/Input-Data#multi-fasta-format for the supported FASTA header.

### Value

A data frame of input data in long-format containing seed gene IDs ( or orthologous group IDs), their orthologous proteins together with the corresponding taxonomy IDs and values of (up to) two additional variables.

### Author(s)

Vinh Tran tran@bio.uni-frankfurt.de

### Examples

    inputFile <- system.file(
        "extdata", "test.main.fasta", package = "PhyloProfile", mustWork = TRUE
    )
    fastaParser(inputFile)

[Package PhyloProfile version 1.4.11 Index]