PWMGEVBackground-class {PWMEnrich} | R Documentation

## Generalized Extreme Values (GEV) background for P-values

### Description

The three parameters of the GEV distribution are fitted by doing linear regression on log of sequence length.

### Slots

`bg.source`:

  textual description of where the background distribution is derived from

`bg.loc`:

  linear regression model for estimating the location parameter based on log(L), list of lm objects of PWMs

`bg.scale`:

  linear regression model for estimating the scale parameter based on log(L), list of lm objects of PWMs

`bg.shape`:

  linear regression model for estimating the shape parameter based on log(L), list of lm objects of PWMs

`pwms`:

  the pwms for which the background has been compiled

[Package PWMEnrich version 4.26.0 Index]