84e60024b80dbe4fdd18cf20efd1a6a3 *CITATION
489f5520cdafcd16d9b77c720cdfa732 *DESCRIPTION
2e28c59f534352460308db525f1309a8 *INDEX
c1ab7ffacdae8b754d57a079e5c31816 *Meta/Rd.rds
1d15b8cd6573641f81c4126b0438e9c2 *Meta/features.rds
c37a9b98d28832d607883a7331624f29 *Meta/hsearch.rds
a68672c5e7ac1e82bc887898b67266b5 *Meta/links.rds
ec71247e9654a0770ace3cef3a485a28 *Meta/nsInfo.rds
b0496b926ff9b7731bc02f4160e1c5fb *Meta/package.rds
ebd3c94c0201f45167328bcf1f42a780 *Meta/vignette.rds
38cf285e308e3106a7338c1ada3926fe *NAMESPACE
34dcf92909c130574dd2a6e9802df8a1 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/PGA
ad9b5573c9820d93421bc58ea5b3e8a8 *R/PGA.rdb
fff6a3d146ee71ce1e31e76204355c74 *R/PGA.rdx
da744d2fd1ce9ea8082ead76055bd1ee *doc/PGA.R
8fe205eac3dc953585f2beca1bc4a2d2 *doc/PGA.Rnw
8ac7705eb37ca19a30dd284b0b9ab4d4 *doc/PGA.bib
8ae88fb894c4423dae2d7ae7b4417286 *doc/PGA.pdf
c946a4e9edacdc559c6b907704244b98 *doc/index.html
d2d3001867978814dbb4f00d42de4619 *extdata/annotation/exon_anno.RData
9dada94eeb9674f03ed9b635c52cba72 *extdata/annotation/ids.RData
db7bedb40cc3d176b8adcb26cd2b7dc4 *extdata/annotation/procodingseq.RData
d1736ea15c31f160d149ed72a3e0baed *extdata/annotation/proseq.RData
b628aedf208c94ce986553216beb0e64 *extdata/annotation/splicemax.RData
90e65f32186a16153d5eec36bec09147 *extdata/annotation/txdb.sqlite
573459978f57f4b27cf015f8c1e0c987 *extdata/fusion/star-fusion_example_input.tsv
3aafce959a5cf5cdf207215ec236bbe2 *extdata/input/PGA.vcf
51fc19ac042cc844740c53b8d9cdf5ec *extdata/input/Trinity.fasta
671180bb64135edd17d9aa1e9e943063 *extdata/input/junctions.bed
9dff2ad9f7ff0e0eb8e05242ad5d8950 *extdata/input/mascot.dat
a9121d2732844083edb4558ab53cfb1d *extdata/input/msgfplus.mzid
1268f9781323037abfb7413176f8d76d *extdata/input/pga.mgf
8552639adf7bd23addfbb4dab285c0cd *extdata/input/transcripts.gtf
31035d33dde2f7183e5602e37e33bf80 *help/AnIndex
9b6a74ecbf3b5278a8613605afc4e67b *help/PGA.rdb
4a0df8465b005092480fe9b46d87f585 *help/PGA.rdx
d902b122b70fa1731146121f93b7704c *help/aliases.rds
3cfb5ce4f7eab9192e41ea34763b9e3a *help/paths.rds
27c4d48dfd35bddc8f78630a5cdb1fdc *html/00Index.html
15180f39cb6637f6145c5212b7957019 *html/PrepareAnnotationEnsembl2.html
e44f9d29152b773fbcc7b2e952c172e7 *html/PrepareAnnotationRefseq2.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
32ce261f0ea6d9c68b5077d0cc16cdae *html/addGeneName4Ensembl.html
c961a47329b480b05d783b0c28e442e7 *html/buildFusionProteinDB.html
a185afa1e752090660309866fcea4f03 *html/createProDB4DenovoRNASeq.html
573159a236b887b6d12449528f087eda *html/dbCreator.html
9c5908026d624ed01709c15019d692fb *html/easyRun.html
860fe29813685c8cb237f54817176fd4 *html/parserGear.html
4f65074007dfb26ba2424a1fc79ea423 *html/reportGear.html
7d791516f062111672cfe8f594a4aea8 *html/runTandem.html
912baa3efd6bd570df218f6072007c34 *parser4PGA.jar
720b2a86b21fa0eacbaf1abdbdf455ec *unitTests/test_check_parser.R
