Version 1.19.1

o set2key, set2keyv, and key2 of data.table were deprecated and had been removed.

Version 1.15.1

o Implementation for the protein database construction from fusion events(buildFusionProteinDB). Currently, this function only supports the calling result from STAR-fusion.

Version 1.14.1

o Add a parameter to set FDR
o Update parser program

V
Version 1.13.3

o Fix bug in function reportGear.R

Version 1.13.2

o Fix bug in function reportGear.R

Version 1.11.4

o Fix bug in function PrepareAnnotationRefseq2.R

Version 1.11.2

o Add a option 'tabFile' in the 'dbCreator' function for the support of Hisat2 "splicesites.tab" in junction construction. As HISAT2 is a successor to both HISAT and TopHat2, we recommend that users switch to 'tabFile' from HISAT2 instead of 'bedFile' from Tophat2.

Version 1.9.1

o As the "getTable()" of rtracklayer would produce a Bad Request error. We temporarily disabled the code checking of the "PrepareAnnotationRefseq2" function until the bug had been fixed. Please use the "PrepareAnnotationEnsembl2" to prepare the annotation file instead of "PrepareAnnotationRefseq2".

Version 1.5.1

o Fix the bug in Outputaberrant2

Version 1.3.15

o Fix some bugs

Version 1.3.10
o Fix the bug of citation file
o Update site of ensembl when using useMart

Version 1.3.6
o Add citation information

Version 1.3.5
o Fix some bugs
o Add the funcion of constructing the Trinity protein DB
o Add the "addGeneName4Ensembl" function

Version 0.1.0
o First release version

