Package: PERFect
Type: Package
Title: Permutation filtration for microbiome data
Version: 1.4.0
Date: 2019-09-02
Author: 
    Ekaterina Smirnova <ekaterina.smirnova@vcuhealth.org>,
      Quy Cao <quy.cao@umontana.edu>
Maintainer: Quy Cao <quy.cao@umontana.edu>
Description: 
    PERFect is a  novel permutation filtering approach designed to address
    two unsolved problems in microbiome data processing: (i) define and  quantify 
    loss due to filtering by implementing thresholds, and (ii) introduce and evaluate
    a permutation  test for  filtering loss to provide a measure of excessive filtering.
Depends: R (>= 3.6.0), sn (>= 1.5.2)
Imports: ggplot2 (>= 3.0.0), phyloseq (>= 1.28.0), zoo (>= 1.8.3),
        psych (>= 1.8.4), stats (>= 3.6.0), Matrix (>= 1.2.14),
        fitdistrplus (>= 1.0.12), parallel (>= 3.6.0)
License: Artistic-2.0
Encoding: UTF-8
LazyData: false
BugReports: https://github.com/cxquy91/PERFect/issues
URL: https://github.com/cxquy91/PERFect
Suggests: knitr, rmarkdown, kableExtra, ggpubr
biocViews: Software, Microbiome, Sequencing, Classification,
        Metagenomics
VignetteBuilder: knitr
RoxygenNote: 7.1.0
NeedsCompilation: no
git_url: https://git.bioconductor.org/packages/PERFect
git_branch: RELEASE_3_12
git_last_commit: 69a0a0a
git_last_commit_date: 2020-10-27
Date/Publication: 2020-10-27
Packaged: 2020-10-28 03:28:19 UTC; biocbuild
Built: R 4.0.3; ; 2020-10-28 14:54:52 UTC; windows
