.omnipath_options_defaults
                        Default values for the package options
OmnipathR               The OmnipathR package
get_annotation_resources
                        Retrieves a list of available resources in the
                        annotations database of OmniPath
get_complex_genes       Get all the molecular complexes for a given
                        gene(s)
get_complex_resources   Retrieve a list of complex resources available
                        in Omnipath
get_enzsub_resources    Retrieves a list of enzyme-substrate resources
                        available in OmniPath
get_interaction_resources
                        Retrieve a list of interaction resources
                        available in Omnipath
get_intercell_categories
                        Retrieves a list of categories from the
                        intercell database of OmniPath
get_intercell_generic_categories
                        Retrieves a list of the generic categories in
                        the intercell database of OmniPath
get_intercell_resources
                        Retrieves a list of intercellular communication
                        resources available in OmniPath
get_resources           Retrieve the available resources for a given
                        query type
get_signed_ptms         get signs for ptms interactions
import_all_interactions
                        Imports all interaction datasets available in
                        OmniPath
import_dorothea_interactions
                        From the OmniPath webservice imports
                        interactions from the DoRothEA dataset
import_intercell_network
                        Imports an intercellular network combining
                        annotations and interactions
import_kinaseextra_interactions
                        Imports interactions from the 'kinase extra'
                        dataset of OmniPath
import_ligrecextra_interactions
                        Imports interactions from the 'ligrec extra'
                        dataset of OmniPath
import_lncrna_mrna_interactions
                        Imports interactions from the lncRNA-mRNA
                        dataset of OmniPath
import_mirnatarget_interactions
                        Imports interactions from the miRNA-target
                        dataset of OmniPath
import_omnipath_annotations
                        Imports annotations from OmniPath
import_omnipath_complexes
                        Imports protein complexes from OmniPath
import_omnipath_enzsub
                        Imports enzyme-substrate relationships from
                        OmniPath
import_omnipath_interactions
                        Imports interactions from the 'omnipath'
                        dataset of Omnipath
import_omnipath_intercell
                        Imports OmniPath intercell annotations
import_pathwayextra_interactions
                        Imports interactions from the 'pathway extra'
                        dataset of Omnipath
import_post_translational_interactions
                        Imports all post-translational interactions
                        from OmniPath
import_tf_mirna_interactions
                        Imports interactions from the TF-miRNA dataset
                        of OmniPath
import_tf_target_interactions
                        Imports interactions from the TF-target dataset
                        of OmniPath
import_transcriptional_interactions
                        Imports all TF-target interactions from
                        OmniPath
interaction_graph       Build Omnipath interaction graph
pivot_annotations       Converts annotation tables to a wide format
print_interactions      print interactions
print_path_es           print network paths given by edge sequence
print_path_vs           print networks paths given by node sequence
ptms_graph              Post-translational modifications (PTMs) graph
