get_signed_ptms {OmnipathR} | R Documentation

## get signs for ptms interactions

### Description

ptms data does not contain sign (activation/inhibition), we generate this information based on the interaction network

### Usage

    get_signed_ptms(
      ptms = import_omnipath_enzsub(),
      interactions = import_omnipath_interactions()
    )

### Arguments

`ptms` | ptms data frame generated by `import_omnipath_enzsub`
`interactions` | interaction data frame generated by `import_omnipath_interactions`

### Value

data.frame of ptms with is_inhibition and is_stimulation columns

### See Also

`import_omnipath_enzsub` `import_omnipath_interactions`

### Examples

    ptms = import_omnipath_enzsub(resources=c("PhosphoSite", "SIGNOR"))
    interactions = import_omnipath_interactions()
    ptms = get_signed_ptms(ptms,interactions)

[Package OmnipathR version 2.0.0 Index]