te.table {ORFik} | R Documentation

## Create a TE table

### Description

Creates a data.table with 6 columns, column names are:
variable, rfp_log2, rna_log2, rna_log10, TE_log2, id

### Usage

    te.table(df.rfp, df.rna, filter.rfp = 1, filter.rna = 1, collapse = FALSE)

### Arguments

`df.rfp` | a `experiment` of Ribo-seq or 80S from TCP-seq.
`df.rna` | a `experiment` of RNA-seq
`filter.rfp` | numeric, default 1. What is the minimum fpkm value?
`filter.rna` | numeric, default 1. What is the minimum fpkm value?
`collapse` | a logical/character (default FALSE), if TRUE all samples within the group SAMPLE will be collapsed to one. If "all", all groups will be merged into 1 column called merged_all. Collapse is defined as rowSum(elements_per_group) / ncol(elements_per_group)

### Value

a data.table with 6 columns

### See Also

Other TE: `DTEG.analysis()`, `DTEG.plot()`, `te_rna.plot()`

### Examples

    #df.rfp <- read.experiment("Riboseq")
    #df.rna <- read.experiment("RNAseq")
    #te.table(df.rfp, df.rna)

[Package ORFik version 1.10.13 Index]