getWeights {ORFik} | R Documentation

## Get weights from a subject GenomicRanges object

### Description

Get weights from a subject GenomicRanges object

### Usage

    getWeights(subject, weight = 1L)

### Arguments

`subject` | a GRanges, IRanges or GAlignment object
`weight` | a vector (default: 1L, if 1L it is identical to countOverlaps()), if single number (!= 1), it applies for all, if more than one must be equal size of 'reads'. else it must be the string name of a defined meta column in subject "reads", that gives number of times a read was found. GRanges("chr1", 1, "+", score = 5), would mean "score" column tells that this alignment region was found 5 times.

### Value

a numeric vector of weights of equal size to subject

[Package ORFik version 1.10.13 Index]