correlation.plots {ORFik} | R Documentation

## Correlation plots between all samples

### Description

Get 2 correlation plots of raw counts and log2(count + 1) over selected region in: c("mrna", "leaders", "cds", "trailers")

### Usage

    correlation.plots(
      df,
      output.dir,
      region = "mrna",
      type = "fpkm",
      height = 400,
      width = 400,
      size = 0.15
    )

### Arguments

`df` | an ORFik `experiment`
`output.dir` | directory to save to, 2 files named: cor_plot.png and cor_plot_log2.png
`region` | a character (default: mrna), make raw count matrices of whole mrnas or one of (leaders, cds, trailers)
`type` | which value to use, "fpkm", alternative "counts".
`height` | numeric, default 400 (in mm)
`width` | numeric, default 400 (in mm)
`size` | numeric, size of dots, default 0.15.

### Value

invisible(NULL)

[Package ORFik version 1.10.13 Index]