DTEG.plot {ORFik} | R Documentation

## Plot DTEG result

### Description

Plot DTEG result

### Usage

    DTEG.plot(
      dt,
      output.dir = NULL,
      p.value = 0.05,
      plot.title = "",
      width = 6,
      height = 6,
      dot.size = 0.4,
      xlim = c(-5, 5),
      ylim = c(-10, 10),
      relative.name = "DTEG_plot.png"
    )

### Arguments

`dt` | a data.table with the results from `DTEG.analysis`
`output.dir` | a character path, default NULL(no save), or a directory to save to a file will be called "DTEG_plot.png"
`p.value` | a numeric, default 0.05 in interval (0,1) or "" to not show. What p-value used for the analysis? Will be shown as a caption.
`plot.title` | title for plots, usually name of experiment etc
`width` | numeric, default 6 (in inches)
`height` | numeric, default 6 (in inches)
`dot.size` | numeric, default 0.4, size of point dots in plot.
`xlim` | numeric vector, default c(-5, 5)
`ylim` | numeric vector, default c(-10, 10)
`relative.name` | character, Default: "DTEG_plot.png". Relative name of file to be saved in folder specified in output.dir. Change to .pdf if you want pdf file instead of png.

### Value

a ggplot object

### See Also

Other TE: `DTEG.analysis()`, `te.table()`, `te_rna.plot()`

### Examples

    #df.rfp <- read.experiment("Riboseq")
    #df.rna <- read.experiment("RNAseq")
    #dt <- DTEG.analysis(df.rfp, df.rna)
    #DTEG.plot(dt, xlim = c(-2, 2), ylim = c(-2, 2))

[Package ORFik version 1.10.13 Index]