writeNormalizedDatasets {NormalyzerDE} | R Documentation

## Write normalization matrices to file

### Description

Outputs each of the normalized datasets to the specified directory.

### Usage

    writeNormalizedDatasets(nr, jobdir, includePairwiseComparisons = FALSE,
      includeCvCol = FALSE, includeAnovaP = FALSE,
      normSuffix = "-normalized.txt",
      rawdataName = "submitted_rawdata.txt")

### Arguments

`nr` | Results object.
`jobdir` | Path to output directory.
`includePairwiseComparisons` | Include p-values for pairwise comparisons.
`includeCvCol` | Include CV column in output.
`includeAnovaP` | Include ANOVA p-value in output.
`normSuffix` | String used to name output together with normalization names.
`rawdataName` | Name of output raw data file.

### Value

None

### Examples

    data(example_summarized_experiment)
    normObj <- getVerifiedNormalyzerObject("job_name", example_summarized_experiment)
    normResults <- normMethods(normObj)
    normResultsWithEval <- analyzeNormalizations(normResults)
    outputDir <- tempdir()
    writeNormalizedDatasets(normResultsWithEval, outputDir)

[Package NormalyzerDE version 1.8.0 Index]