getNearToIntron {NoRCE} | R Documentation

## Get only those neighbouring genes that fall within intron region

### Description

Get only those neighbouring genes that fall within intron region

### Usage

    getNearToIntron(
      bedfile,
      upstream,
      downstream,
      org_assembly = c("hg19", "hg38", "mm10", "dre10", "rn6", "dm6", "ce11", "sc3")
    )

### Arguments

`bedfile` | Bed file
`upstream` | upstream distance
`downstream` | downstream distance
`org_assembly` | genomee assembly of interest for the analysis. Possible assemblies are "mm10" for mouse, "dre10" for zebrafish, "rn6" for rat, "dm6" for fruit fly, "ce11" for worm, "sc3" for yeast, "hg19" and "hg38" for human

### Value

genes

### Examples

    regions<-system.file("extdata", "ncRegion.txt", package = "NoRCE")
    regionNC <- rtracklayer::import(regions, format = "BED")

    r<-getNearToExon(bedfile = regionNC,
                     upstream = 1000,
                     downstream = 2000,
                     org_assembly = 'hg19')

[Package NoRCE version 1.2.0 Index]