predictmiTargets {NoRCE} | R Documentation

## Predict the miRNA targets for the miRNA or mRNA genes, which is specified with type parameter

### Description

Predict the miRNA targets for the miRNA or mRNA genes, which is specified with type parameter

### Usage

    predictmiTargets(gene, type, org_assembly)

### Arguments

`gene` | Data frame of miRNA or mRNA gene. Formats should be NCBI gene name, ENSEMBL gene or transcript id, and mirna
`type` | Format of the gene, it should be "NCBI" for NCBI gene name, "Ensembl_gene" for ENSEMBL gene id, "Ensembl_trans" for Ensembl transcript id and "mirna" for miRNA gene
`org_assembly` | Analyzed genome assembly. Possible assemblies are "mm10" for mouse, "dre10" for zebrafish, "rn6" for rat, "dm6" for fruit fly, "ce11" for worm, "hg19" and "hg38" for human

### Value

miRNA:mRNA target sets of the given genes

### Examples

    a<- predictmiTargets(gene = brain_mirna[1:100,],
                         org_assembly = 'hg19',
                         type = "mirna")

[Package NoRCE version 1.2.0 Index]