bsseq_to_log_methy_ratio {NanoMethViz} | R Documentation

## Convert BSseq object to log-methylation-ratio matrix

### Description

Creates a log-methylation-ratio matrix from a BSseq object that is useful for dimensionality reduction plots.

### Usage

    bsseq_to_log_methy_ratio(bsseq, prior_count = 2)

### Arguments

`bsseq` | the BSseq object.
`prior_count` | the prior count added to avoid taking log of 0.

### Value

a matrix containing log-methylation-ratios.

### Examples

    methy <- system.file("methy_subset.tsv.bgz", package = "NanoMethViz")
    bsseq <- methy_to_bsseq(methy)
    log_m_ratio <- bsseq_to_log_methy_ratio(bsseq)

[Package NanoMethViz version 1.0.0 Index]