7ed07e2e31ced82d514bf5861659d356 *DESCRIPTION
d3e100db61ce620bc3e132024b3e1917 *INDEX
1ebbd3e34237af26da5dc08a4e440464 *LICENSE
4f69e6b265da25358a88b91f3c2f7811 *Meta/Rd.rds
3b60a1701a23df60bdc922b31715c778 *Meta/features.rds
00319985a669ecfb4f3e89cf1f02691c *Meta/hsearch.rds
6994548a02604647539d62f0c36686f6 *Meta/links.rds
1e5d248fc42a4ceaaee08f84de0d392a *Meta/nsInfo.rds
d2e21e9a47a3d6bcfaded17a8a27af1a *Meta/package.rds
6eb09bdf29c64101142510cc423c6b3a *Meta/vignette.rds
a1263724bfa9ba5812cab2fd10918d2c *NAMESPACE
bbb1add69784e37a665baf396e88b480 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/MesKit
085c2ac04c2d2bfb51a391e56d247b2f *R/MesKit.rdb
7201b2602b2fab89e7663de4c1e797c9 *R/MesKit.rdx
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1508615e1a7f0832a3df504448954268 *doc/index.html
73475c69d50a8abbc5003c6e3fbcc1de *extdata/COREAD_all_lesions.conf_99.txt
bbf1e42df7b342e819b48232e9d0d68a *extdata/COREAD_amp_genes.conf_99.txt
fd83f06be6020795a6b453796382036e *extdata/COREAD_del_genes.conf_99.txt
5bdcaf3ff5882c3de7026f47dec38c25 *extdata/CRC_HZ.ccf.tsv
eed935c4fda91359832edc4c4a1aef9d *extdata/CRC_HZ.clin.txt
477c455f8ca51d6ac0e13456abbe4c1e *extdata/CRC_HZ.maf
c1ec49b2e5288fb7e622e128ac250a30 *extdata/CRC_HZ.seg.txt
1df1e2385c47c6ea75b63be0482d8bdd *extdata/IntOGen-DriverGenes_COREAD.tsv
c8ca223fcfef444096ae3f527356be7f *extdata/signatures.cosmic.rds
7207c9f423908046fc188f42e3454b4a *extdata/signatures.etiology.rds
bc5935304abda95d788802f35e7c3fff *extdata/signatures.exome.cosmic.v3.may2019.rds
fed50b039f3c4a1fb5fed7768ecdd2b2 *extdata/signatures.nature2013.rds
9d9216211923bb8c635bb75e2a8361d4 *help/AnIndex
eb1b0564d504f0e7e9abf51253f1fb4d *help/MesKit.rdb
0e1ad02793c52193ab188ac546157db3 *help/MesKit.rdx
30e81cad4f2d36995d5b8dc9e55519f0 *help/aliases.rds
8752c95ffe529cd1566b58de2ed77d70 *help/paths.rds
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4b1eccae8f28bde8c78ea846f31c728b *html/MafList-class.html
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05ba4fe66f1366b374b621dc8544a5b8 *html/calFst.html
f5f0a3948ad188beca24aaec526d7251 *html/calJSI.html
c40d6ec72996ba731f02f020dba29117 *html/calNeiDist.html
175fe151ce7773ad9366ba537b73563f *html/ccfAUC.html
c867b42e321227cc342d4697fc4d56b8 *html/classifyMut.html
13f4e19b184358f19d7bd01d2682a044 *html/cna2gene.html
a266d49842a5fa70b7f4b22fee1b001a *html/compareCCF.html
7825f0a7c4bf829a979376f23cdedff1 *html/compareTree.html
bf9ba3d230aa996b492e8925022d9484 *html/fitSignatures.html
b8ab40eea292b5e7811ae939c4d1bc20 *html/getBinaryMatrix.html
10adc9c7e3479fddbd0c725afb2b3b22 *html/getBootstrapValue.html
1c855a7db27f390dd04f493930b4edf1 *html/getBranchType.html
76a8cd03957d87c2b9b091d1212cedb7 *html/getCCFMatrix.html
adeadc052c810341dbd347c5031e2b1f *html/getMafData.html
e129339a8f9b5938c212661e2a43bb43 *html/getMafPatient.html
e1624bea81f26b09ba890b80ef074fac *html/getMafRef.html
ccd045675715a1b43cc7c416dbec8fe6 *html/getMutBranches.html
a49e2062d3bac104fd7e4bcea0ec8512 *html/getNonSyn_vc.html
dfc702d60e011499245f855abaccfc54 *html/getPhyloTree.html
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b29aef8a753f7cbfe46aa5958d503ccb *html/getPhyloTreeRef.html
03736231c48588df08ce2a044ef200c0 *html/getPhyloTreeTsbLabel.html
0702d8723cf9a7a7946f896a6fbd43cc *html/getSampleInfo.html
e3125ed90b4d3affad78f591e789f331 *html/getTree.html
156c9c54f8d317f47331ed7e4e43af74 *html/getTreeMethod.html
3464746e970bd8898be0f840d8f18950 *html/mathScore.html
4a0a4458cc59d2cf4a3d4b7f96cff737 *html/mutCluster.html
cd9e12b43ada197c48312065b3a2b45d *html/mutHeatmap.html
7fc5a8070647eb51cbefaf2d65169a21 *html/mutTrunkBranch.html
e5567526a09d5113b644f4e0550ee450 *html/phyloTree-class.html
a4cf09a115f5e0f78f4e26853148a80c *html/phyloTreeList-class.html
a488184d3f5b5701cc239b84f27120c5 *html/plotCNA.html
c5cfe23f968420960f9491b5983efe87 *html/plotMutProfile.html
80e67ca142f946d86afb2e9e503dfe75 *html/plotMutSigProfile.html
fa25c3285ea639618858221e9d8662c0 *html/plotPhyloTree.html
843cf42072fe8b1e185622f617996e26 *html/readMaf.html
9555176588b3cabb9bf0221d355073e9 *html/readSegment.html
9492723e1e48f000be21c31b051dd3f6 *html/runMesKit.html
87104fddcb3edddf85ed0c2b64e45db7 *html/subMaf.html
4fe4569df713519ebffd918e6ad2537f *html/testNeutral.html
0c97a3fd86ca3defb21af72d15e02866 *html/triMatrix.html
5b67b29040734bd56ac967ab12be5266 *script/DATASETS
e285402f3565aa9ce185b3e796eb7152 *shiny/dom/ccf.CSV
d99fe9de18f20abd0107c959ae39766f *shiny/dom/maf.csv
8c081cc279d772c5d36e10045543539c *shiny/server.R
1e0bcf508d06aba61a9a4cd679ef462c *shiny/ui.R
59e22dcf8d8365ab2b2f489af0d14edd *shiny/www/css/main.css
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