adjustProteinLevel	adjustProteinLevel
annotSite	annotSite
estimateAbundance	estimateAbundance
extractMeanDiff	extractMeanDiff
fitLinearModel	fitLinearModel
fixedGroup	fixedGroup
fixedGroupBatch	fixedGroupBatch
locateMod	locateMod
MSstatsPTM	MSstatsPTM
PTMcompareMeans	PTMcompareMeans
PTMestimate	PTMestimate
PTMlocate	PTMlocate
PTMnormalize	PTMnormalize
PTMsimulateExperiment	PTMsimulateExperiment
PTMsummarize	PTMsummarize
simulatePeaks	simulatePeaks
simulateSites	simulateSites
simulateSummarization	simulateSummarization
summarizeFeatures	summarizeFeatures
tidyEstimates	tidyEstimates
tidyFasta	tidyFasta
