getDefaultModelOptions {MOFA} | R Documentation

## Get default model options

### Description

Function to obtain the default model options.

### Usage

    getDefaultModelOptions(object)

### Arguments

`object` | an untrained `MOFAmodel` object

### Details

The model options are the following:

- likelihood: character vector with data likelihoods per view: 'gaussian' for continuous data, 'bernoulli' for binary data and 'poisson' for count data. By default, they are guessed internally.

- numFactors: numeric value indicating the initial number of factors. If you want to learn the number of factors automatically we recommend setting this to a large value, default is 25.

- sparsity: logical indicating whether to use sparsity. This is always recommended, as it will make the loadings more interpretable. Default is TRUE.

### Value

Returns a list with the default model options, which have to be passed as an argument to `prepareMOFA`

### Examples

    # load data
    data("CLL_data", package = "MOFAdata")
    #create a MOFAmodel object
    MOFAobject <- createMOFAobject(CLL_data)
    # set model options
    ModelOptions <- getDefaultModelOptions(MOFAobject)
    ModelOptions

[Package MOFA version 1.6.2 Index]