diagnostic_adjust_batch {MMUPHin} | R Documentation

## Diagnostic visualization for adj_batch function

### Description

Diagnostic visualization for adj_batch function

### Usage

    diagnostic_adjust_batch(feature_abd, feature_abd_adj, var_batch, gamma_hat,
      gamma_star, output)

### Arguments

`feature_abd` | original feature-by-sample matrix of abundances (proportions or counts).
`feature_abd_adj` | feature-by-sample matrix of batch-adjusted feature abundances, with covariate effects retained and scales consistent with original abundance matrix.
`var_batch` | the batch variable (should be a factor).
`gamma_hat` | estimated per feature-batch gamma parameters.
`gamma_star` | shrinked per feature-batch gamma parameters
`output` | output file name

### Value

(invisbly) the ggplot2 plot object

[Package MMUPHin version 1.4.2 Index]