adjust_EB {MMUPHin} | R Documentation

## Perform batch adjustment on standardized feature abundances, based on EB shrinked per-batch location and scale parameters

### Description

Perform batch adjustment on standardized feature abundances, based on EB shrinked per-batch location and scale parameters

### Usage

    adjust_EB(s_data, l_params_shrink, l_stand_feature, batchmod, n_batch,
      l_ind)

### Arguments

`s_data` | feature-by-sample matrix of standardized abundances.
`l_params_shrink` | list of shrinked parameters, as returned by fit_shrink.
`l_stand_feature` | list of per-feature standardization fits, as returned by fit_stand_feature.
`batchmod` | design matrix for batch variables.
`n_batch` | number of batches in the data.
`l_ind` | list of indicator matrices, as returned by construct_ind.

### Value

feature-by-sample matrix of batch-adjusted feature abundances.

[Package MMUPHin version 1.4.2 Index]