GlobalPlot {LinkHD} | R Documentation

## Global-Plot

### Description

this function outputs a plot from a DistStatis object. The plot shows the projection of the all common observation onto each subspace used at the integration step

### Usage

    ## S4 method for signature 'DistStatis'
    GlobalPlot(x)

### Arguments

`x` | DistStatis class object.

### Value

plotted GlobalPlot/s of the component/s of the given DistStatis object.

### Author(s)

Laura M. Zingaretti

### Examples

    {

    data(Taraoceans)
    pro.phylo <- Taraoceans$taxonomy[ ,'Phylum']
    TaraOc<-list(Taraoceans$phychem,as.data.frame(Taraoceans$pro.phylo),
    as.data.frame(Taraoceans$pro.NOGs))
    TaraOc_1<-scale(TaraOc[[1]])
    Normalization<-lapply(list(TaraOc[[2]],TaraOc[[3]]),
    function(x){DataProcessing(x,Method='Compositional')})
    colnames(Normalization[[1]])=pro.phylo
    colnames(Normalization[[2]])=Taraoceans$GO
    TaraOc<-list(TaraOc_1,Normalization[[1]],Normalization[[2]])
    names(TaraOc)<-c('phychem','pro_phylo','pro_NOGs')
    TaraOc<-lapply(TaraOc,as.data.frame)
    Output<-LinkData(TaraOc,Scale =FALSE,
    Distance = c('ScalarProduct','Euclidean','Euclidean'))
    GlobalPlot(Output) +
    theme(panel.grid.major = element_blank(),
    panel.grid.minor = element_blank(),
    panel.background = element_blank(),
    axis.line = element_line(colour = 'black'))

    }

[Package LinkHD version 1.4.0 Index]