952cd8a865a70d0542de8a32aa47dbb1 *DESCRIPTION
a17fa95104c91768d41f007f69b84f9e *INDEX
dd4ab9d20de367c6a562061d514245c3 *Meta/Rd.rds
429284cb6dccc6b7df10bb24ee36a41e *Meta/data.rds
1d15b8cd6573641f81c4126b0438e9c2 *Meta/features.rds
c1a3cf0c50824a7577b8d56dbf39674c *Meta/hsearch.rds
c24f44b1af619c21a74c6f93f87e3d1e *Meta/links.rds
3e9b0fdfadcffc342fc53a49cba4ecd4 *Meta/nsInfo.rds
89a61dbad072b95a08c6de4f020fa142 *Meta/package.rds
eea152e0b8a5b7cbf12619f77a501422 *Meta/vignette.rds
33dcdf66a5988188e8f6519846492066 *NAMESPACE
2ebe4c7cf8d1db4d767be380003460bd *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/InPAS
ed1438e762ece9d6ca7d65209efd2369 *R/InPAS.rdb
84e0d78644f743d01e56f092e0c26471 *R/InPAS.rdx
875c71c35a5962e7306813868c1c42bf *data/datalist
cafef1e05d73c03e50d90e87935f9ba0 *data/utr3.danRer10.rda
ad1b6f62495ed8cceb7981b4c5573152 *data/utr3.hg19.rda
12aa976301363411d421ba9a97ffbd63 *data/utr3.mm10.rda
dc299f90f3cd31ebba0b1a75f442e54c *doc/InPAS.R
c2bf3a9f910d284b3f4606d7e38d890c *doc/InPAS.Rmd
2546eec51b67b1ffc95cb5a28e15ccc2 *doc/InPAS.html
0015487fddc81e8e1f85316ea6ab499a *doc/index.html
fd39ad651f9d1366d13a0d741098d0b3 *extdata/Baf3.extract.bedgraph
5ca9fbb2ed92f46da01127f48a5188c0 *extdata/CPs.MAQC.rda
fa1e4fe6f1c33d7ca297fa12506a0d2a *extdata/UM15.extract.bedgraph
ceeb863c3251b708f8fc30ec7266b816 *extdata/coverage.MAQC.rda
30f138b6f554fb5e304e86e2d568663f *extdata/eset.MAQC.rda
74350e6c2359aed876a3af9b030509ae *extdata/polyA.rds
7960399b72ebfd0cace25f5682a04821 *help/AnIndex
d1d655ba1c36fefccafd81cf0087931e *help/InPAS.rdb
696870919b7420152796e372992c29f3 *help/InPAS.rdx
162c9cb9bc4529c08a114a5f3d2f7ec3 *help/aliases.rds
c90446e25f268aaf7034d595bf2dd4a3 *help/paths.rds
c6af5738498d6cf1ff6e1df9af53c2ca *html/00Index.html
a14e8e353baac6e0c231d018d563e4e2 *html/CPsite_estimation.html
aa9440afe0921bd67f7e290882326d92 *html/CPsites.html
adb46d4b3387b223c6d07f35015862eb *html/InPAS-package.html
9742332ab3b78bcad9acb60010640cc0 *html/PAscore.html
ab33bb869810c4d5acb421a5093f9550 *html/PAscore2.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
a7576845519994621e6c3f5ab21d3b02 *html/UTR3TotalCoverage.html
167ba5e4915f754013aa778aabf5e9da *html/UTR3eSet.html
073c211c6ae7bd2ef8308251f8413695 *html/UTR3usage.html
114694218b434b3c77ae25053a9096be *html/covThreshold.html
623f681c1483df24c379df8bc0d7a33e *html/coverageFromBedGraph.html
38276cb9e00d71653632461fc3b3015e *html/coverageRate.html
df5b5338fefd57d293db2014b1c37b92 *html/depthWeight.html
21c259c9549641d9aeeaaed7aadcf4f3 *html/distalAdj.html
632171aa5126651649d215822b117da8 *html/filterRes.html
2a2b3192b91bdc24c89427016e5fecb9 *html/fisher.exact.test.html
2fe4c0061b1dfb60f42a61c4755f00bb *html/get.regions.coverage.html
e5885f9746e0dbfc8f14eac69fad7cb9 *html/getCov.html
e264f2a11f298eec0016ecfed1bb34d0 *html/getUTR3eSet.html
347c605dce2992a4c350ab481d0fdafe *html/getUTR3region.html
52e61d03efee242d633efd55f1e46643 *html/inPAS.html
ca9119f2fa72afdb152ccc5715ceb608 *html/lastCDSusage.html
75a4b20cf427ba713e9a511c8d50a37c *html/limmaAnalyze.html
d34aea36f9e780d9784c4f145c9ecc8a *html/optimalSegmentation.html
651fc02213f2800012397f19ec56e2dc *html/polishCPs.html
fe42714976eff39279ea7c9b92e074ae *html/prepare4GSEA.html
d83b376010b82a616523494f650c8cd8 *html/proximalAdj.html
2f78be3140b93cbca865690786e41646 *html/proximalAdjByCleanUpdTSeq.html
99d1d56bf503d3f8161de02617c82bf6 *html/proximalAdjByPWM.html
fe5b0cc2676adaecf55bee7eacf7ae53 *html/removeUTR3__UTR3.html
f1b1c6547d3b5a6eb953cbc1316d0c71 *html/searchDistalCPs.html
59e43b5dabfc8917010797db15bb4712 *html/searchProximalCPs.html
199435827106661fe192ec7fb148e67f *html/seqLen.html
4d00636627ce212050caa7090db9e342 *html/singleGroupAnalyze.html
7fc853b9891666af243e5372c68d6071 *html/singleSampleAnalyze.html
6e0f0f15d5a0518bc6aec455bde9dc69 *html/sortGR.html
c87716c3417b08fa079698f909ac8451 *html/testUsage.html
34a177a10a5373d1a0f39c896dcca06b *html/totalCoverage.html
99ebed47e5dbfec8db998bcd2e337c43 *html/trimSeqnames.html
60d740223073eaa529c0dac60f2011e5 *html/usage4plot.html
ab5efb4b2e405abdacab27c26efff0ad *html/utr3.danRer10.html
afa6dadfc0dd45d00b16ee1fa65d2d05 *html/utr3.hg19.html
e67a5966472078d51f8db84bd0793ef9 *html/utr3.mm10.html
6063c24b89ccf36cd9eb2c91a77a394b *html/utr3Annotation.html
1eb51bae1e8d7455b1446ecffc6a22e4 *html/utr3UsageEstimation.html
d994cd72addca39c450a9b22a4a6536d *html/valley.html
84725de77cc5e68d580a1b930bf44ae1 *html/zScoreThrethold.html
9c0364f33917c3e3b5d5cfd94a33dd0d *unitTests/test_CPsites.R
34a65fd52a724977969eb6861dd86ed3 *unitTests/test_coverageFromBedGraph.R
3102a9d14d794b5356a01a5a326e407b *unitTests/test_getUTR3eSet.R
