HierarchicalClustering {ILoReg} | R Documentation

## Hierarchical clustering using the Ward's method

### Description

Perform Hierarchical clustering using the Ward's method.

### Usage

    HierarchicalClustering.SingleCellExperiment(object)

    ## S4 method for signature 'SingleCellExperiment'
    HierarchicalClustering(object)

### Arguments

`object` | of `SingleCellExperiment` class

### Value

object of `SingleCellExperiment` class

### Examples

    library(SingleCellExperiment)
    sce <- SingleCellExperiment(assays = list(logcounts = pbmc3k_500))
    sce <- PrepareILoReg(sce)
    ## These settings are just to accelerate the example, use the defaults.
    sce <- RunParallelICP(sce,L=2,threads=1,C=0.1,k=5,r=1)
    sce <- RunPCA(sce,p=5)
    sce <- HierarchicalClustering(sce)

[Package ILoReg version 1.0.0 Index]